Array 1 107512-106262 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMX01000004.1 Salmonella sp. SG118 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107511 29 100.0 32 ............................. CCCTTTATCTTGGCTGCCAGAACGAGAACGCC 107450 29 96.6 32 A............................ ACATGGGGCGGTGGTTCGGGTTGTAGGTGATT 107389 29 100.0 32 ............................. TCTATAGCCTCTTTCTGCTTCATCCATGTACA 107328 29 100.0 32 ............................. TCGCTCAAGTTGACGCTGAGATATATTCATTC 107267 29 100.0 32 ............................. CGCGCCAGGCTTGTACTGGACGAGTGGCTAAA 107206 29 100.0 32 ............................. GTATAAGGCGCGGCTTTACTGTGAATCCAGGG 107145 29 100.0 32 ............................. AGGGTCGTAGCTATGTCGTTTAACTTGAGTCG 107084 29 100.0 32 ............................. TTGGGAGAGTTTACGGTAACTATCCAGAGAAA 107023 29 100.0 32 ............................. ATCTGGCCGCAATATTCAACCAACAGGCCTTT 106962 29 100.0 32 ............................. TATACCCGGGAACATGACGGGTATACGGTTGA 106901 29 100.0 32 ............................. ACCTGCCGTGACATGACTCTGCCGGAGCTGGA 106840 29 100.0 31 ............................. ACCAGGGGGTTTTTCCACGTATCGCCGCTGC 106780 29 100.0 32 ............................. AGTACAATGAGCTGATCTCAGCGGCTAAAACT 106719 29 100.0 32 ............................. GTCAAACGAAATTACACACAGACCCACGCTAC 106658 29 100.0 32 ............................. CGGAAAAGCGCAAGCCGCAGGTACGGGCAAAA 106597 29 100.0 32 ............................. AGGATGCGGGCAATCCGGCCAGTTTTCTCGTC 106536 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 106475 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 106414 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA G [106393] 106352 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 106291 29 96.6 0 ............T................ | A [106264] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125007-124307 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNMX01000004.1 Salmonella sp. SG118 contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125006 29 100.0 32 ............................. ATCCAATTGGACTGAATGGAGGTATTAACCTC 124945 29 100.0 32 ............................. GCGTTTGATATTACGTTATTCAGTACCACTAT 124884 29 100.0 32 ............................. GGAGAATTGATAATTTAGATAGCAAGGTTGAT 124823 29 100.0 32 ............................. CAGCCCTGCTCTCTGGCAAAAATGAGTGAGCA 124762 29 96.6 32 ...................C......... ATTGGTGAGGGGATTATTGAGCGGCGGTCAAC 124701 29 100.0 33 ............................. CGTTTATCGCCTTTCAGTGATTTCAGCCATGAA 124639 29 100.0 32 ............................. CGGAACCGCTCCGGCAGGACAATTTCATCTGT 124578 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 124517 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 124456 29 96.6 32 ..........T.................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 124395 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 124334 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATCAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //