Array 1 509325-507045 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215974.1 Chryseobacterium taihuense strain 3012STDY6944375 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 509324 46 74.5 30 T...AC.....A...GGCGA..-.TA..................... GAAGGAAAAGAAAGCGTTCAAAACGTTATA T [509315] 509247 47 100.0 30 ............................................... GAACTGCAGAATTTATATTATGCTTTAAAT 509170 47 100.0 30 ............................................... CATTCTCATTTAAAGGGCAAGGATCAAAGT 509093 47 100.0 30 ............................................... TTTATACCCTGAAATTCAAATTTTTCACCA 509016 47 100.0 30 ............................................... AGGCGATGGATAAAACCGATCAGGAGATTA 508939 47 100.0 30 ............................................... CCGCCGATTACAGTACTCACTTCCTTCGCT 508862 47 100.0 30 ............................................... ACTTAGGATTACCAAATATTCAAGGAACTA 508785 47 100.0 30 ............................................... TTTTCTTTTTTTTTGTTTTCTTCAGGATAA 508708 47 100.0 30 ............................................... GTAGTGATTTCGCTGTGCATATTTTGCCCG 508631 47 100.0 30 ............................................... AGATGAAAATAACAGATAATAACCTGTACT 508554 47 100.0 30 ............................................... TTTTCTTTTTTTTTGTTTTCTTCAGGATAA 508477 47 100.0 30 ............................................... GATAAAAATATTAATTAATTTCATCTATCA 508400 47 100.0 30 ............................................... TACTATTATTCAGGTTATGTTTGGAATATC 508323 47 100.0 30 ............................................... GTCAGGAAGAAGGAGATTTGAATGGGGGAG 508246 47 100.0 30 ............................................... TTTGTAAAGTTTTAGAATTAAATCTAGATT 508169 47 100.0 30 ............................................... AGAATGGGCGAAACTTGGGAAGAACAAGGT 508092 47 100.0 30 ............................................... TTTGTAAAGTTTTAGAATTAAATCTAGATT 508015 47 100.0 30 ............................................... TAATAGAATAAAGAGCCGTTAAATACGGAG 507938 47 100.0 30 ............................................... CAGGTGAAAAAATAAATATCTCTTGGGATG 507861 47 100.0 30 ............................................... ACGACCAGACGGAACCGCTCTACTTCCAGG 507784 47 100.0 30 ............................................... TTGATTTGGTAGCAGTATCAATAATATCGT 507707 47 100.0 30 ............................................... TCAGGAAGCGCTTGGAGATCCAAGAAAATT 507630 47 100.0 30 ............................................... CTATCACTTGTATTTAATTAGTAAACAGAT 507553 47 100.0 30 ............................................... TCTACCAAATCATAGACATCATCTGGAGCT 507476 47 100.0 30 ............................................... CTCGGTAGGATTCCCGCGCATACATGCCAT 507399 47 100.0 30 ............................................... ATGGGAGTTTATCAATGACAAATCAACAGA 507322 47 100.0 30 ............................................... GTCGTTTTTCGTAGCCATAAAATGAAAATT 507245 47 100.0 30 ............................................... ATATTCTGAATTTTTAAAGTTCAGATACTG 507168 47 100.0 30 ............................................... GTTAATTTTCTGACAAATCCCAATCCATTA 507091 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 30 47 99.2 30 GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Left flank : TATAGAGGCCATATTCGTAGAATTCTTCTGATGTAAAAGTTTTTTAGTGAAATGTCACCTTTTATATCGTTTTCATGTAATAGTAATGAGGTAATAAGAAAACCACTTAAAACAAAAAAAAGTACAACTCCAAGCTTGCCTATTATTTGAAAGAATGGAACATTCCAAAAATTATCTAGTTTAAATAGTGATTTATATAGTTCAATATGATGGATTATCACCAAAGATGCTGCAATAAATCGAAGGCTATTAAGGTTGGGATAAATTTTTTTCATTTTCATTATTTTCTCAAAAGTAAAACAATTCTTAGGTAGATGAAAAAGTTGTTATTAAAATAATCAAAGAAAATATGAAAATAATTTTAAACATATTAAAATTTCTCTTAAAAAATCTCAACGCCATTCACTCAGGCTTTGGGATGTGAAAAATAAAAACGCTTTTTAAATAGGGTTTAAATGGGGTTTAATTGTTGATTTTTTTTGACGTTTTGTTTTAATTTT # Right flank : CTCAAAATTTAACCCTCTGTTTTTCAGAGGGTTTATTTTGTTTTTAGGATTTAAAATTCAGAACAATTCGAGCTGTTGAAAGGTCGGTGGCGGTTCTTCTTTATTTCTGGCAAAAAAGATTTCGATATCGCCAAACTGCTTATCGGTAATGCACATAATGGCCACTTTTCCGGCTTTCGGAAGCATAAATTTCACCCTTTTGATGTGCACTTCTGCATTTTCCCGGCTCGGACAGTGTCGTACATACATCGAAAACTGGAATAACGTAAATCCGTCATCAATCAATGCTTTCCGAAAACGGTTTGCATCTTTCATATTCGCTTTCGTTTCGGTCGGGAGGTCATATAATACTAAAACCCACATAATTCGGTATGCATTAAACCTTTCGGCGTTCATATCTTCAGTAAAATGAATAATGTAAAAAGTAAGATGAATTTCTTTTTATCATATTAGTTCCGGATAGGAAATCAGTCGTTTTTCTCCTGTATAGCATTTGTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATGACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCATTTTTGAGTATCTTTGAGATATTACACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1122418-1121670 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215974.1 Chryseobacterium taihuense strain 3012STDY6944375 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================= ================== 1122417 37 100.0 30 ..................................... CAACATTCGTAAAACTGATTATCCGGTAAA 1122350 37 100.0 30 ..................................... AGGCTGTCAAACCTCCTGCTTTACTTTCAG 1122283 37 100.0 30 ..................................... GGAAGTTGATTTACCGTTACCGGCACTAAA 1122216 37 100.0 30 ..................................... CTTTATACCTCTTAGTTCTCTGTAAGATAT 1122149 37 100.0 30 ..................................... CTGTCATAGAAGGCTTTCCCATAAACTCAC 1122082 37 100.0 30 ..................................... GTTCTTTGTTTTTTGTGTCCGTACTTCATA 1122015 37 94.6 30 .....C..........A.................... TCTTTCCGTTGGGGAGGATGCCGTATTTTT 1121948 37 100.0 137 ..................................... CTTTAATTTATCTTCTTCAGCTTTAAGATCGTTGCGACTGCTCTCAATTTTATGAGTTTTTATATTTTTAAGGAATTGATGAATGTTATTTGGAGGGTAAACACAACTACATCTCTCAATTTGAAGTGTTCTTCTAT 1121774 37 83.8 30 ....T.........T.A...A.A...A.......... TTTCATAATTTATTTTATTAGTTCTGGGTC 1121707 37 97.3 0 ................A.................... | T [1121686] ========== ====== ====== ====== ===================================== ========================================================================================================================================= ================== 10 37 97.6 42 GTTGCGACTGCTCTCAGTTTTGGAGGGTAAACACAAC # Left flank : GATTTACAGCAATGTAACAGATAAAGGCGCGCTTTTAAATGAAATTGAACAAAAGGATAAAACAGTCAAAAAAAATCCTAATTTTAAAAAATATATTGTCAATGGTTTATTGAAACAAATTAAAAAAATGAACGTTGATAATTTTAAAATAACTCAAGATGGTTTTAAATTTAATAATTTAACAAAGGACATCCTGAATTCTTATACGGAGTTAGAACAAAAAACAACGCTTTTGGTTTTGATACGAAACAAATTTGCACACAATCAATTACCCAACAATGAAGTATATGAATTTAGTCAAAACCTTTTAAAAAGAGAGGAAAACCAAACATATGCAGCGTATTATTTAGAAATATTTAAAAAATTGAAAACAGAACTGCAGTAGTTATTATTATGCTCTTTGATATTTGCTTTTAAGAAATTTGCCATGTTTTTAGCATTGTAAAAACAGGCTCTACACTCCGATAAAACCGAGCAATTTGCTACCTAAAACCATTGAG # Right flank : AAACCCTGTCAAGATTCAAAACCTTGACAGGGTTATTCTTTGGTACATAAAAGAAGATGGAGGAATTTGAAAATTAAACAGCTGCTTTGTAATTCTTGTATATTCGAGACTTTTAACAAACTTTAACTCAAAAATGGCATTCATTGTGTTGATTAATGCAAGTATTTATCAGAAATTTACCCATTATTTTAAATTAAACTATGTCAGATTCATATCAAGCAGAAGACATCCGTCAGCTTACTGAGAAAGTGAAAGAGCAGAATTACTTTTTTAATCTTCTGAGACAGGAAATCAATAAAGCAATCGTAGGACAGCAGTATATGATAGACCGTCTTCTGATCGGTCTTTTAGGGAATGGTCACGTCCTTCTGGAGGGAGTTCCCGGTCTGGCAAAAACTTTAGCGATAAAGACTTTGGCAGAAGCCGTTCATGGTGAATTTTCAAGAATACAGTTTACGCCGGATCTGCTTCCTGCTGATGTTGTGGGAACGATGATCTTC # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-1.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACTGCTCTCAGTTTTGGAGGGTAAACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //