Array 1 188022-184272 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTCA010000005.1 Bifidobacterium animalis isolate A82_75.BA.DSS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188021 29 100.0 32 ............................. CATTACCTCGTCGACATCGAGGACTGGGAATA 187960 29 100.0 32 ............................. TCGCCATACGAACAATGCCGGATGGGCGATTC 187899 29 100.0 32 ............................. TGTCCGGCGATCGCCGCTGGCACACGGTAATA 187838 29 100.0 32 ............................. GCCCCCGCGCCGTCGTGTTTGAACGGTGCGAT 187777 29 100.0 32 ............................. GGCACGAGCAGGACCTGTCATTCCTGCCAGCC 187716 29 100.0 32 ............................. GCGAACATCGCTGCAGGATGCGCACGCGCGAA 187655 29 100.0 32 ............................. GGCACGGGCAGGACCTGTCATTCCTGCCAGCC 187594 29 96.6 32 ............................G ATCGCGATCTTCATCGAACCGCCCGAGCTGGA 187533 29 100.0 32 ............................. GGGCAGCTGCGTTCGATGCCGCTCAACGTGAC 187472 29 100.0 32 ............................. GACGCATCAGACACCGACATCGACCATGTGAA 187411 29 100.0 32 ............................. TCATTCTCGCTCGTGGTGTTACCCCTTGGTCC 187350 29 100.0 32 ............................. TGGGTCCACCACTCGCTCACCGCATTGGTGCC 187289 29 100.0 32 ............................. TGATAGCGCCGCATACGCTGTCGTACCGCATG 187228 29 100.0 32 ............................. ATGAAGGTGGGCGTCGCCGAGGCGATCGCCCG 187167 29 100.0 32 ............................. AAGTCCGCCGAGTCGGTGCATGTGCAGGTGGA 187106 29 100.0 32 ............................. AACACAGTGGGTTCGAGTCCCACCGGGGGCAC 187045 29 100.0 32 ............................. GGTGCGCCACGGTATGTGCAGAACATTACGAA 186984 29 100.0 32 ............................. AGCTCATTGTCAAAAGCGGATTGGTGGTCGGT 186923 29 100.0 32 ............................. ATTTGTTCGAATCTTTCCTCGTCGTGGCAGAT 186862 29 100.0 32 ............................. ATTCAACAAGGTAAAACGAATTATCATGGACG 186801 29 100.0 32 ............................. ACCGAATCAGTCCGAAACAGCTGAGAGACAGC 186740 29 100.0 32 ............................. AGTGACGAATACGACGAGTTTCAGATCATGAA 186679 29 100.0 32 ............................. ATTCAACAAGGTAAAACGAATTATCATGGACG 186618 29 100.0 32 ............................. GGCTGCCCATTCGCCTCACGCGCCACGCTCAC 186557 29 100.0 32 ............................. AGATTTCGTTCACCAACAGGAACAACCTTATA 186496 29 100.0 32 ............................. CGCAAGCTTGTGCGCAACAAGGACGTGGAAGC 186435 29 100.0 32 ............................. TCATCACGGTACGCGGTCCGCGACGCGACCGG 186374 29 100.0 32 ............................. GACGCATTGCGCAGTGTCGTGCAGGGCGTCAC 186313 29 100.0 32 ............................. CAGAGTCGGTTGATTTGGTCGCATGCCTGCTG 186252 29 100.0 32 ............................. ATCTTGACCGCGCTCACGCCGAATGCCATCGA 186191 29 100.0 32 ............................. AGCAGCGTTCATTGTGTCGTGTGTCTGATTCG 186130 29 100.0 32 ............................. CGGAGTGACTTCCGGCATGAACCGTAGGTCAC 186069 29 100.0 32 ............................. TGATGCTGTTGCACCACATGCTGTTCGTCGCG 186008 29 100.0 32 ............................. AAGACGATCGATAACATTATCAATCTGGCGGC 185947 29 100.0 32 ............................. ACCGAATCAGTCCGAAACAGCTGAGAGACAGC 185886 29 100.0 32 ............................. GAAAGAAAAAACACCATGTGCGAAGAATTCGA 185825 29 100.0 32 ............................. GTCCACGGCGAGCGCGAACGCAAGGCCCAATG 185764 29 100.0 32 ............................. GCATCATCAGCGAGGACCTGTGGACGTCCACG 185703 29 100.0 32 ............................. AACACGATTAACTGACATGGCGAGCAAGGCAC 185642 29 100.0 32 ............................. TTGATTGGCAACATGGCGTTCGCGTCGGTCGC 185581 29 100.0 32 ............................. CCACCGTCGCCATGTACTGCCGGCAGTACCGG 185520 29 100.0 32 ............................. AAACAGCATGATGCCGAGGAACGCTATCAGTA 185459 29 96.6 32 ............................A TATCGTCGCATTTTCCCGCGCAAATTGCCAAA 185398 29 100.0 32 ............................. GGCGAGCGTACCAAGCGACGTGTTGCGGTCGT 185337 29 100.0 32 ............................. TGTTGGGACATGAACCGGTCGAGCTCTTCGAC 185276 29 100.0 32 ............................. GACACGCCGACTTGAAAAAGGTCGGCGTTTTA 185215 29 100.0 32 ............................. CCAATGGAGCACAGCGCCGGACTACTGACACG 185154 29 100.0 32 ............................. CTTAAATTAGTAAACGTTATAAGCGCGTGAAT 185093 29 100.0 32 ............................. TGAGTATCGAATCGTATTTCCGATCTCCTTAC 185032 29 100.0 32 ............................. TGGCTCCTCGTGACGATTGCCTGTGCGAGATG 184971 29 96.6 32 .......................A..... TGCCGAGCGGGTGGATCGGCACACCCTCAACG 184910 29 100.0 32 ............................. TGGCCGCGCATCGTCGTCGACAGCGTCGTGCA 184849 29 100.0 31 ............................. GCCAGTGCGTGGACAAACAGCACAGCCAGAT 184789 29 96.6 32 ............................T GCGATGACCGTCTCGCCGTTGCTGATGACGCG 184728 29 96.6 32 ........T.................... GCGGCATGGGGCAACACTGCGTATCTGGACGA 184667 29 96.6 32 ..........................T.. TACACCGAGATAACGCAGGCCGCCGGCAATCT 184606 29 93.1 32 ...........G....T............ ACGGCCGACAAGATCAGCGGACGACCCGTGAC 184545 29 93.1 32 ..............TA............. GCCTACGGCATCCCACCCGAACTACTCGGCAT 184484 29 96.6 32 ................T............ GATGCGCAGTTGCAGGCGCTCGTGGCGTCAGC 184423 29 96.6 32 ..........................T.. GACAACAACGCCTGCAAGAGGCCGGACTGAAT 184362 29 89.7 32 A......A......T.............. CAGGCCGGGTACCTCCATCCACTGCAAAACGG G [184354] 184300 29 89.7 0 ........T...G.............T.. | ========== ====== ====== ====== ============================= ================================ ================== 62 29 99.0 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CGCTAGGGGACGAGTGGAATGAGGAACCATGGTAGTCATCGTTCTGACGGCATGCCCTGCAGGATTGCGCGGTGACGTGAGCAGATGGTTATTGGAGATATCTCCCGGCGTCTTTGTGGGACGTATCAGTGCTCGCGTACGTGAGAAGTTGTGGGAGCGCATCGTCGACACCCTCAAAGACGGCAGGGCCATTATGGTATTCTCAGCTAGGAACGAGCAGCACCTTGATTTTCGCGTATTCAGATCCGATTGGCAGCCAGTGGATTGCGACGGATTGCAATTGATCAAGCATCCAAACGAGGAGAAACGCGAGACTTACGCGGGGACGAAGCGGCATGGGTGGAGCAACGCTGCCAAATACAGGCGTGCACGCAAATACCGTGGATAACAGCCGTGCGTTTCGGCAAGTGTTTCTTCTTTTAGACATTGTAGAAAAGAGAAGTGAATAAAAACAGACTTCCTTCTTTTCTGATATGTTGAGATTATTGGGATTTCTTAGT # Right flank : TGACTAGTGTATTTTGTCAAATCGGCGTTTTGGCTTGGGTACCGGGCTGCGTTGCCGCTGTCTCGATTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGTATGTTGATTATGCCATGAGGTCTCTAGTTCTTGCTGGTGTCGGCGCATGTTTGTGCCATTCGGTCTTGACGCATTCATTCCAGTATCCGGCCAGATAGTCGTTGAGGTCGTTGATGAACTCGTCGATGCTGTCGTCTTGGTGGTTCCGGTTGTGGTAGGAGAGGGATGAATTTTGTAGGACGAGTATCAGGGTATTGCTCCGATTTTGGGGATTGAAACATCCATGGTGATGCCGAGGTAGTGGCTAGATGTAATTCCAATTATCCATCTGTTGTTAGGTCTAACGATGGGGAGAATAGGAGCGACCATTGTTTGTATTACTACAATGATTTGGGTCCACAAGGAATACAGAGATGGCTTTATCTCAGGAAGCATTGTGAGCAGGGTATGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //