Array 1 32329-30665 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPFC01000036.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE142 SE142_S1_L001_R1_001_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32328 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 32267 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 32206 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 32145 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 32078 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 32017 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31956 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31895 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31834 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31773 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31712 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31651 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31590 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31529 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31468 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 31407 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31346 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31285 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31224 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31121 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 31060 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30999 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30938 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30877 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30816 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30755 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30694 29 96.6 0 A............................ | A [30667] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49712-48586 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPFC01000036.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE142 SE142_S1_L001_R1_001_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49711 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49650 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49589 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 49528 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49467 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49406 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49345 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 49284 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 49223 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 49162 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 49101 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 49040 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48979 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48918 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48857 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48796 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 48735 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 48674 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 48613 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //