Array 1 3884834-3883357 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPF01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABBSB1189-1 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3884833 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3884772 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3884710 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3884649 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3884588 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3884527 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3884466 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3884405 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3884344 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3884283 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3884222 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3884161 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3884100 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3884038 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3883935 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3883874 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3883813 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3883752 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3883691 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3883630 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3883569 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3883508 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3883447 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3883386 29 96.6 0 A............................ | A [3883359] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3902581-3900966 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPF01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ABBSB1189-1 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3902580 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3902519 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3902458 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3902397 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3902336 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3902275 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3902214 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3902153 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3902092 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3902031 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3901970 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3901909 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3901848 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3901787 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3901726 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3901665 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3901604 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 3901543 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3901481 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3901420 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3901359 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3901298 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3901237 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3901176 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3901115 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3901054 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3900993 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //