Array 1 204687-205471 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQKP01000073.1 Escherichia coli strain LTVUHB42 NODE_936_length_279609_cov_37.114243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 204687 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 204748 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 204809 29 96.6 39 ............................N NNNNNNNNNACGCCATCAGTTGAATATGTGCGCGCCATT 204877 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 204938 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 204999 29 93.1 40 ...........................NN NNNNNNNNTGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 205068 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 205129 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 205190 29 89.7 37 ..........................NNN NNNNNNNCTCAGGCTTTACCCACTCTTTTACAGTGTC 205256 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 205317 29 96.6 36 ............................N NNNNNNNNNCTCGTAATTTATCAGGCTCGAATTCAG 205382 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 205443 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ======================================== ================== 13 29 97.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : NNNNNNNNNNAGGCCGTCGCCGGATCAGCCTGGCTATGCCGAGCTCCCCGCGCCAGCGGGGATAAACCGTTCTTGCGGGTGTTGCAAATATTCTTCACGTAGAGCTCCCCGCGCCAGCGGGGATAAACCGGACGCCGCCGCCGCGAAGCCGTTTCCGATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 205511-205661 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQKP01000073.1 Escherichia coli strain LTVUHB42 NODE_936_length_279609_cov_37.114243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205511 29 100.0 32 ............................. TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 205572 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 205633 29 93.1 0 ...T........................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GAGCTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACNNNNNNNNNNTGAGATGCCGTTTGCCGTTTTTCTGTTTTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGCTCACGTTTAGTGCCAGAGCCAGGCGGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGCTGGCTACCCTGGGGGTATTCAGTGACTAGTGTTCCCCGCGCCAGCGGGGATAAANNNNNNNNNNCTCAGGCTTTACCCACTCTTTTACAGTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCAGAAGTTCGGCATTGCCCGCAAAGATTTGTCACGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNCTCGTAATTTATCAGGCTCGAATTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATCTCGCGGAATACACCGACGAGGCGGGCGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNAGGCCGTCGCCGGATCAGCCTGGCTATGCC # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGCTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGCTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 231364-231514 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQKP01000073.1 Escherichia coli strain LTVUHB42 NODE_936_length_279609_cov_37.114243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 231364 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 231425 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 231486 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCATTGCTCAAACAGGCTGCATAACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAAAAAATACGGCTGGATGCGACAAAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTACACGGATATTCTGTCTAAAAGTTAACTAGTGTTCCCCGCGCCAGCGGGGATAAANNNNNNNNNNGCTATGGAATTTATGGAGAAGTTTGGTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAATTTGTTGTCCGCGATCCGGTACGCGCGTGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNCCGCTCTGTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 231717-232930 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQKP01000073.1 Escherichia coli strain LTVUHB42 NODE_936_length_279609_cov_37.114243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 231717 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 231778 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 231839 29 89.7 37 ..........................NNN NNNNNNNGCTATGGAATTTATGGAGAAGTTTGGTTTT 231905 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 231966 29 96.6 39 ............................N NNNNNNNNNCCGCTCTGTGTTCGATAAACTCATCCAGCA 232034 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 232096 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 232157 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 232218 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 232279 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 232340 29 93.1 38 ...........................NN NNNNNNNNATTGGCCTCACTGCCACCGCAGTTAATACT 232407 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 232468 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 232529 29 86.2 34 .........................NNNN NNNNNNGATGTAATAATTAGAGCAGAATCCAGTT 232592 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 232653 29 96.6 37 ............................N NNNNNNNNNAAAATCCCCGTTTCTGTTACATGGGCGA 232719 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 232780 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 232841 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 232902 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 20 29 98.1 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTAACGCGGCCCGCCTCTGCGTTGGCGTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGTTTCTGGAACCGTAATTTGCTGCGGTATGTGTTCCCCGCGCCAGCGGGGATAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTCATTGCTCAAACAGGCTGCATAAC # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //