Array 1 40725-38369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNIJ010000005.1 Bacteroides intestinalis strain BSD2780120875b_170604_G9 NODE_5_length_339926_cov_20.0345, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 40724 47 83.0 30 .....A.....T......C..T....T..........TA.......C CTGTTGGCGTAGATACGAATATGCTCGATT C [40709] 40646 47 95.7 30 ..........AT................................... GCAAAGGTATCTTGCAGCCATGGCAGGAAA 40569 47 100.0 30 ............................................... CGGTCACAATAAAATCCAGATTCACCTTAC 40492 47 100.0 30 ............................................... CCAACATAGGAGCAAAACGAAGCATAACCT 40415 47 100.0 30 ............................................... CAAAAGATGCACTTGAAGAACTGTGTCATG 40338 47 100.0 30 ............................................... GTTGACGGCGAATGTCCAATCATCATCTTT 40261 47 100.0 31 ............................................... ACCGCGCCACAATCAGGATGAAAAGTATTCG 40183 47 100.0 30 ............................................... CATTTGTTGGCGATTAACTGTAATGCTCTC 40106 47 100.0 30 ............................................... TTGAATTTGCTCGATTACTGCGTTTCATAC 40029 47 100.0 30 ............................................... TTGAATTTGCTCGATTACTGCGTTTCATAC 39952 47 100.0 30 ............................................... TCTTTCAACAAGATACCCGCCGAACGACTG 39875 47 100.0 30 ............................................... TGTTTTCATAATTTTACCAATTAAAAGCCC 39798 47 100.0 30 ............................................... AAAAATATAGGGTTAACGGTCAGTCGATAG 39721 47 100.0 30 ............................................... AAGATATTAGAGATAACCTTCCTACGGCTA 39644 47 100.0 30 ............................................... TGGAACTACTGTTGATTGTAATTCCATTAA 39567 47 100.0 29 ............................................... GGCAGTTGTTCCACAGCGATTGCCTGTGT 39491 47 100.0 30 ............................................... GGACTCGTCGAATTATACGAGTGGTATTGA 39414 47 100.0 30 ............................................... TGTAGGATATAAGGTAAAAACTCCATTGGT 39337 47 100.0 30 ............................................... ATGCGTCTTTACAAGAACCTGTTGGAAGAT 39260 47 100.0 30 ............................................... CCCCTCTCCTGTCAAGCCGTAAAACACACC 39183 47 100.0 30 ............................................... ACAAGGAATTTTTGTGACTTCGCCAGTTTC 39106 47 100.0 30 ............................................... TCAAGAGGAAGAAATAACGATAGAATTTCT 39029 47 100.0 30 ............................................... CTTGAAAGACAGAACTGTCTAATCCTTTAA 38952 47 100.0 30 ............................................... TGGAATACGACAATCACCTTGAAGTCCTTG 38875 47 100.0 30 ............................................... TACCAGTCTTAACATCGTATCTATTATTCC 38798 47 100.0 30 ............................................... CATTATGGCAACAAATAAGATTAATGAAAA 38721 47 100.0 30 ............................................... ATATGTACACCAACGAACCGATAGACGCGT 38644 47 100.0 29 ............................................... ATTATTAGATTATGAAACAACCGAATAGT 38568 47 100.0 29 ............................................... TAAATGGTATGCGTACCTCGGATGGTGCG 38492 47 100.0 30 ............................................... AGGCATATAACAAGAAGAACAAGGATTATT 38415 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 31 47 99.3 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Left flank : CGCCTCAATATCTTCGAATATACTTTCGACGAACATGATGAGACGGTAGCTTATTCTCTGTCTATTCCTTTCGTCTCTACGTTTGTTTTTGCAGCGGTGATGAAGCACCAGGAGGCTCCGGGTACTACGTTCAAGAAGCATATGGCTATTGCCAAGGGTTTGCTGAGTGAGGATGATTACTTGCTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTGCTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCTGTATCTGACGAAGATTAGGGAAAAGATAAAATAGACAGGTGGGATTAAGGGATTGAAGAGAGGAGGGGGTACGGAAAAGGAAGTGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGGGATGATATTTAGGATTGGGGGAGCATACTTATTTCTAAAATTATTAAAAATAGTCAAATATAGGCAGGAATGAAATAAAATTCT # Right flank : ACAACCTACATTACAAATTGATTTTCAATTAGTTATAAACCATTTTTGAAATACAAAAACGATGCTGTTTTCAATTAAGAATCCCGCATTTAAGTGGGATTTCTTTTTCTAGAAAAGCTCTAATTGCTGACCGGGAGTATTTATATCCAAAGATTTTTTCCCATAAAACAACTCTATATTTCCAAATTGCTTATCTGTAATACACATAATTCCAACCTGCCCATGCTCCGGCAAGAAAGATTTAACTCTTTTTATATGAACTTCTGCATTCTCACTACTAGCACAATGACGAACATAAATAGAAAACTGAAACATAGTAAAGCCATCTTTCTGCAGATTCTTCTTAAAATCTACATATGCTTTCTTATCCCTCTTTGTTTCAGTAGGCAAATCAAATAATACAAGTACCCACATAATACGATATTCACTAAATCGGTTCATCTCACATTTCCGGATATAATATTCTACGCAATTCACCACTAAAGCATTTATACAAAGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //