Array 1 828-338 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000015.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 827 29 100.0 38 ............................. ACGGACAGGGCAATAGATGATATTTGCAGAGTTTACAA 760 29 100.0 37 ............................. TGAACTTGAAAGTGAAGTAGTTGGGAATGGCTTTTTA 694 29 100.0 34 ............................. CCAATTTAAGTTCCAATATCTATTTCTATATCCA 631 29 100.0 37 ............................. TCAAATATATCAATTCTACTAACAGATTTATCTCTAA 565 29 100.0 37 ............................. ATATGTAGATGAATTTTCTACATTAGAAGAAGCAGAA 499 29 100.0 38 ............................. TTATGTCTAATACCATACTTCATAAAATCCTCAAAATC 432 29 100.0 37 ............................. TATGGTATTAGCTTTACTAAAAAAGCAGTTGCAACAG 366 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAGGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCATAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTGCAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAAAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATGTGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TTGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATCTCTAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAATATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAGATTTCTCTAGTTTTGCCGATTTAGTTTTATTCTATAACTAAACAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTACAGGTATGAACATAATTTTACACTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 73622-74112 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000010.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 73622 29 100.0 37 ............................. TCAAGTTATAACTCAATATCTGCTGTTGGTTCTCTTG 73688 29 100.0 37 ............................. ACTTTTATGGACATGTTTTGATTTTTTTGTTATCATA 73754 29 100.0 37 ............................. CTGACTTGGTAAGTCATAATACTCAATATCTAAAATA 73820 29 100.0 37 ............................. TTTACAAGAGTACCTAATACAATCCTCGACAATGAAA 73886 29 96.6 37 G............................ GTTGCCAGCTATATCGTCCCACTCTTGCATTTTTCCT 73952 29 96.6 37 G............................ AAAAAATCATTAAGATTATTTTCTTCTTGACCAAATT 74018 29 96.6 37 G............................ TCTTGATAATGTACATTTATTTTAATACTTTTCTCTT 74084 29 96.6 0 G............................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 98.3 37 ATTTTATATTAACTATGTGGTATGTAAAT # Left flank : AGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAAATATAAATAGTTTTGCAGTGTTCGATTTTTTGAACAAAATATGACTTAACACTTGAAATATAAGGCATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : TAATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTCTTTTCTTCTTTTTAATTCTTCTATTATAAAAATAGCTGCTACTATTAAATAATTAACTTCTAAACCAATTGCTAGGTCAACTATTGTAGTAACAGTTACATTTTTATAATTACTTTTTTCTAATTTAGATATATAACTTTTGTTATAATTAATTTTCTCTGCTAACTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAAATTAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTATCTAGCTAGAGAAAAATAGAAAGTAGTAGAATTTTATAATTAAATTTTTAAGGAGTTGTGGAAAATGTAATAAATTCTAATAAAAAAATTAAAATTATGAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 111655-112209 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000003.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 111655 29 100.0 37 ............................. TTGCTTCAAAAAGTCTTGAATAATCTTTTAGATTATA 111721 29 100.0 37 ............................. AGCATATAACCAAGCTGATAAGGAATTTCCGCAAACC 111787 29 100.0 37 ............................. GCGATTACGTCAAAAATAAATTTCTTTTGTTTGGCAT 111853 29 100.0 37 ............................. ATAAAGTATCTTGTGTAAGTCTTTTTTTTATTCGAGC 111919 29 100.0 36 ............................. AATAAAGTATTAGCTTTAAAGTATATATTATTTATA 111984 29 100.0 36 ............................. CGAGACGCAATAAATACAAATTGGTCAGACTTCATC 112049 29 100.0 36 ............................. TTATACTCAAAGTCATTAATACTAGTAACTCTAAAT 112114 29 100.0 38 ............................. TTTATAACCTTTAATTACACCTCCCATATCACCACCAC 112181 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 99.6 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATCTAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGCATTTACAGATATGCAAGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAGCATTTTCTCCCCTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 66940-66381 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000002.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 66939 29 100.0 37 ............................. TAGTTTTATAAAACCCAGTAATACCAATATATACATA 66873 29 100.0 37 ............................. ACCTTTAAAACATTATTAGCAGATATAGAAACATCTC 66807 29 100.0 36 ............................. TTGTCTATTGCTAAATCCCCATTCCGACCCGGTATG 66742 29 100.0 37 ............................. AATTCATTCATTTTAGACTTAAAACACTTTGGTATAT 66676 29 100.0 37 ............................. TCTATTAGCGCGCCCGTTTCTTTATCGAAAGCTTTGC 66610 29 100.0 37 ............................. TGTGCATCAATTTGTGCGAATAATTTTTTTGGTGTAG 66544 29 100.0 39 ............................. TATCAGCAAACTCATTTATATCAAGATTTTGCTTTTCTC 66476 29 96.6 38 .......................T..... CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 66409 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 97.7 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : ATAACCATAATAAAAATAGTATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTATCTAAACTATGTTTGTTCAGGTAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTCTTTTAATGTGTTATCTTATGATTATATAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCCAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTTATACTTTAACTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATGATGAGAATGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9160-8802 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000022.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 9159 29 100.0 37 ............................. CTTCAAGAAGATGCTAGTTTAAGTGATATATCAACTA 9093 29 100.0 37 ............................. GTTCCTTCTTTAGTTGTTCCTGCTTAATTTTTTCCTG 9027 29 100.0 39 ............................. TTGCCATATGCAATGATTTTCCCGAACCGGGAGTTCCAC 8959 29 100.0 35 ............................. TGACGACGATTATATATTCAGCCTTTTTGGGGCAA 8895 29 100.0 36 ............................. AAGATATTTAATTCTTTGACTTACACTCATATATAA 8830 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CCATTAACTTATGAAATATCTGTAAATGAGCAGATATTTCATAAGTTAATATTTATTGTTTACATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAGTTGTAGCAAGAATAATAATCTAAAGTGGCAAACATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGAATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTATACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : ACAGATATAATATCAAAATAAGGTTAGGACTTTTAAAAGCATAGCCATATCAGTAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTCAACTCTCTTAAACTATTTCCATATCCTTTAGTAGATACTTTTGTTGTTTTTTAATCTTTAGTAATTTGTTCTTGAGTGAACCGCTTATTTTTTCTAAATTATTTCAAGCTTTTCAAAAAATTCTCTATTTATATTCATCACATGTATAATACAATTAATTCAGTTTCAATTGTCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTAGATAAACCAAAAATTTTAGCAAATATTATTAACACACGTCCCTTATTGCTCTTTCACCAGACTCTATTCTATTCATAACACTTATATTTATATTTGTTTTTTTAAACAATTCTTTTTGAGACCTACTCATATTTTCCCTAATATATTTAATCCTTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 40690-40287 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000013.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 40689 29 100.0 37 ............................. TTAAGACAAAATATATATTACTTTCTTTCTCATTTGA 40623 29 100.0 36 ............................. TTCAGTTGGTTCATTTTTTTTAAATAATCTATCATC 40558 29 93.1 212 A.......................C.... AATAGAAATAAAAGTCTAATAAAATAGAGAATCAAATATAATCATCTGATTCTCTATTTATCTTCTTCCCAATCTTTAATAAACTTTTCTAAACTTTTTAATTTATTTTCAGATATTTCTTCATCATCATGTAAAGCACTTAACAAACTTTCAAATGAATTTCTATGAAAGAAACTAAAGAAACTCTTAGTCTCAACTTTCAAATATTCTTC 40317 29 79.3 0 T....C........TT..AA......... | GT [40304] ========== ====== ====== ====== ============================= ==================================================================================================================================================================================================================== ================== 4 29 93.1 95 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : AATAGTTAAAATGGTTGAAAATACAGATTCCGATTTGGGATTTTATATTAACTAAGTGGTATGTAAATGTAGGAACTGACTTCATAAGAATATACAATAACAGTGCTTTTATATTAACTAAGTGGAAAACAGAGTGGTTTTAAACTACTCTGTTTTTATATAAAGTAAAAATAGAAATATAAATTAAGAAAGAAGTGCATATATAAGTTATAAAATAAATTAAATAATAAGTTTTATAAAAATGTATATATAAACTTAAATGATTTTGGTTCTCTATACTCAGTTTATTTAATAAACTAAAATTTTTATTAGATAATTTATGCTATAATAAATATATAAATATGCAGTGTGCGATATTTTGAAAATAAATGCTATAAGGGTTGTAAATACTGAATTATAATGTGTTTTTAAAAATATCAAAAAAACACTACTTGTGGCTCACTGCAAATTTCAATATTTTCTGTATCTGAAAGTATTGAAAATGCCCAATTTATTTCGGG # Right flank : CTATCTTTCTTAACAACTTCTAAAAATCCTCTACCAACTAACCTTCTTAAAAAAGTTAACATAGTTGATTTTTTCCATTCATATTTTTCACCTAGCGTCTTCAAAATTTCAGTAGATGCAACTTCTTCATCTTCACTATCCCAAATGTACATCATTACCAAAAGCTCTGACTCTGGAATCTTTTTTATTTTCAAGTACTACACCCCCGTTTTTTGATATACTATAATACTATTACAATAGAATTTAATTTACAATGAAAAATGTCTAATTATGCATTCCAATTTTTTCCAATTAATTCTGATTATAAAAAATACTTTAATATGCTAATTATAAAGACATATTATAATATTAAATAAATTATTTATTTAATATTATAACTTAAAAGCAGTTCGAAAAAATGTATACAATATAAGTGAAAGTCTTTATTGAATGCCATTTAGTACAACAAAATATTTGCTATATACCTAATAAAATTCTTTTGATGTCATGATATTACAGTT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1107-1658 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000019.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1107 29 93.1 37 ......G.....................T GCTAAAATTGCAGGTGAGAAGAAGAATTATCATGTAG 1173 29 100.0 36 ............................. AAAAAAATAGGAAGACCTGTTGTAGGAAGCCCTAAA 1238 29 96.6 36 ...............A............. TAATCATAGTCGCACATAGTGTAACATTGGCTCTGC 1303 29 89.7 38 A..............A............T TGTCTTATTTTATTATTAAAGTTTTCTTGTTCATTTGT 1370 29 96.6 37 .....................G....... GAATTAGTAGAGTACAAAAATTTAAAGTCAGAATTTA 1436 29 89.7 37 ..A............A............T TCAAATATAAAAGACTTTACATCTTTGCCATCGATTG 1502 29 75.9 37 ...............AA...C.C..G.GT CAGCATTCTAAGTGGGTGGTAAAACACCATATACCTC 1568 29 93.1 35 .............A..............T GCTGCAAAATTTTTTATTGTTATAGACATTGCCTG 1632 27 86.2 0 ....................-.-.A...A | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 91.2 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAGTAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCAATATTTGCGATAAATTGAAGTTTAACAGTTGCAATATAAGGTATTGAGGGTATGTGATAAGTGTTATCAATTGCACTACTCATGATTCACTGCAAATTTGAGAGAGGTGTGTATGTGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : ACTAAATAGAAAAAAGAAAGCACTTACTTAAATAGTAGGTGCTTTTGTTATTCTTTGCTAGATAAAGTAACAAGTTCGTTAGGTGTACATTCAAGAACAAGACAAAGCTTTTCGAATAAATCTAATTTTATAGAACTTGTTTCATTGTTAGCTAATTTCATCATGTTGGGATAAGCTATACCTACTTCTTTAGCTAACCAATATCTAGTTTTGCCTCTTGAATCAAGCAATTTATCAATATTAAAATACATTTTTTCACCTCTTAAGTATATTATACACTGGTTATATAATGTTTGCAATATATAATATGCAAATAATATAATTATGTAATGTTGACATTATATAATGTGTACGATATAATATACTTAAGGAATAAAAAATAAGAGCCACTCGCCCCTACCAAGTTTGAGTAACTCTTATTGACATATACTACATATGCATTAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTAAGGAGTGTATTTTTATGAAC # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 3382-3737 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000019.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3382 29 100.0 37 ............................. GAGGATAAATTTTTCTTCATACTTCTTCTTAGTAACC 3448 29 100.0 37 ............................. TTGTTATAAATATCATTACTATATTTTAACTCTTTAA 3514 29 100.0 36 ............................. AATATCTAAAAAGAATGATTTATATCCCATCTCAAC 3579 29 100.0 36 ............................. TAGCAAATAAGTTGCTCTATTTCTTTTACAGCTTCA 3644 29 100.0 36 ............................. GTACAAATGCACGATTAGCAATGATAAATGATGCTC 3709 29 86.2 0 ....................AC.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 97.7 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTGTTAAAGGAGACAAGAAAAACTACTATATATTGTATAAAAATAATTAGATTTTAGTTTTGAGTTTGAGGGGGATTAATACAATGATTGAAGATTTACTTAATGAATATAATATAAAGGATGATAAAGAGAGAGAAAAGTTTATAAAGTTTGCTAATTTATTATATGAATTACAAAAGAATAATAAAGAAAAGTTTCAAGAATTAACTAATATAATAAATGAACTTTATAAGAAACAACAAGAGAGAAAAAATAAGTAAATAAACAGATAAAGCACTTGAATATTCTACTGTTTCAAGTGCTTTATATGGTAAAAAGTGGTATAATAGAGAAAGAAGTTTTGCAGTGAGCGATATTTGCGATAAAATGGGGCTTAGCAGTTGAAATATAAGGTGTTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTACCCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTCTTGGAAATACACAATTTATTTTGGG # Right flank : TTAAAAATAATTCAAAAACACTTACAAATGAGTAAGTGTTTTTTTTATGAAAGGAGGTGATAATAATGTAAAAATTTTACTGATATAGTATAATAATCCTATAAATTCATTATAATAAAGGGGGATATTATGGGATTATTTAGTGGAAATGAAAGTTGTTGTATATGTGGAGAAAAAGGTAAACAAAAAATATCTGATGGTGTAATATGTTCTGAATGTTTAAAAAAATATAAAGATACATTTTCTATAGTCGAACCAACAGATGTAATTAAAAAAATATCTTCTGAGGAAATAAAAAAATCAATAAGATTAACACTTGAAAATAAAAAAAGATTTGAATCTTTTAACGCAAGTAAAAAAGTAGGAATTTATTTATTAGTAGATGAAAATAAAAAACAATTAATTATATCTGATAAAATAAGCAATTTAAATAAGAATAAGAGAGTATATGACTTTAGGGATATTATTTCATTTGAACTTTTAGAAGATGATGAATCTAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 627704-628462 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUQB01000001.1 Clostridioides difficile strain VRECD0181, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 627704 29 93.1 38 ...............AG............ AAATCTCTTACAGTTCTTTCGCTATCGTTTTTAAAATT 627771 29 93.1 37 ...............AG............ ACTTCCGAAGCAGCTTTATACATTTTCTTAGAAGGTG 627837 29 93.1 37 ...............AG............ TTTTTTACACCTCCAATCCTTTTTAAATTTGTGCAAA 627903 29 93.1 39 ...............AG............ CCATCCATTACCTCATAACGACTTCGTAATACATTATAA 627971 29 100.0 37 ............................. CTGTCTTTATTTACTTATTAAATGTGATGGGGGGCGT 628037 29 100.0 37 ............................. TTTCAATGTTGCTCATATGCTGAGTCGTGATATTAAC 628103 29 100.0 37 ............................. TTTAAGCTCTTAAATATCTTATATTAAACATAATTTA 628169 29 100.0 37 ............................. GATTTTATTAATTCATTCCTTTTTAGATTAGGTACAG 628235 29 100.0 38 ............................. TTGACTTTTTGTTTAAACGCAAATTTCCATTTGTTCTT 628302 29 100.0 37 ............................. CTATTAAATCCTTCTTTAAAAGAGTTAAATGTATTGC 628368 29 100.0 37 ............................. TAATATATGACTTATAACTTTAATTTTTTGATTTTAC 628434 29 86.2 0 ................G....T.TA.... | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 96.6 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTACAAGGTGTACTAGCAAGTATTTTAGCTAGCTATATAGTTTACTTAATAAGTAAGTTATTTAGAAAACGTAAAAAACCACTCAAAGCGGGCACTAAGAGTGGTTGGGAGTTTGATTTTAAAATCAAATTCCATAAATTCAAATAACTTTCAGTTATAGAACTCCACTCTACACCAAATAGATTGTAGTTCTTCTTGCTATTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGGCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAAGCATTGAAATATAAGGCATTGAAGGTATGTGATAAATGTTATCAATTACACTACTCATGGTTCAGAGAGAGTTGTATATGTGTGAGTATTGGAAATGCACAATTTATTTTGGG # Right flank : TTAAAAATAATGAAAAACACTTACTTGAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATAATAATGTAAAAATTTTACTGATATAGTATAATATTGTTAAAGAATATAATTTAGGGGGATATTATATTATGAAGAAAAAAGTATGTTTTTTATTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAGTCCAGAGGAGAGTAGTAAAAATAATGAACCAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTATTTCAGATAAAATGGAAATCACTATTAATAATATTGAATTCTCTTATGATGTTTTACCAAAAGTTAAGGAAAGTTTATATACACATTATCCTGCTGAGTCAGGCAAAGTATATATTGATATTGCTGCTGATATAAAAAATACTCAAAAACAAGAGTTAAATTGTTCAGATTTACTAACTATTGAAGCAAATTATAATGATGGGTATAAAT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : GTTTTAGATTAACTAAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //