Array 1 47048-56191 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSXE01000001.1 Rathayibacter toxicus strain FH146 FH146_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47048 29 96.6 32 ............................T AAAAGTGTCGCGCGTGGATATGCTCAGACTAA 47109 29 100.0 32 ............................. GAGGTTGACAATGGCTCGTGGGTCAACGGCTC 47170 29 100.0 32 ............................. GTTGCCTTAAGAAGCGAGTCTAGGATGTTTGC 47231 29 100.0 32 ............................. TCCCGGCTCATATATGACGTAGCGTCGGTGGT 47292 29 96.6 32 ............................A AACTGCGCGGGCATCAGGGCGGAAAGCTCATC 47353 29 100.0 32 ............................. TACCCCACGGACGACGGCGGAATTACTAGGGA 47414 29 96.6 32 ............................G ACGTCGAGCGACATGTCGAACTGTATAGGGCG 47475 29 96.6 33 ............................T AGCTAGCGCCGCATCCACAAAAACCAGAACATC 47537 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 47599 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 47661 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 47722 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 47784 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 47845 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 47906 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 47967 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 48029 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 48090 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 48151 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 48212 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 48273 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 48334 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 48395 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 48456 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 48517 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 48579 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 48640 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 48702 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 48763 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 48824 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 48885 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 48946 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 49007 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 49068 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 49129 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 49190 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 49252 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 49313 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 49374 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 49435 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 49496 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 49557 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 49619 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 49680 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 49741 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 49802 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 49863 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 49925 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 49986 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 50047 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 50108 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 50169 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 50230 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 50292 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 50353 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 50415 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 50476 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 50537 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 50598 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 50659 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 50720 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 50781 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 50842 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 50903 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 50965 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 51026 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 51087 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 51149 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 51211 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 51272 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 51333 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 51394 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 51456 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 51517 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 51578 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 51639 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 51700 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 51761 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 51822 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 51883 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 51944 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 52005 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 52066 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 52127 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 52188 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 52250 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 52311 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 52372 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 52433 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 52494 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 52555 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 52616 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 52677 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 52738 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 52799 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 52860 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 52921 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 52982 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 53044 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 53106 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 53167 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 53229 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 53290 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 53351 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 53412 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 53473 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 53534 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 53595 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 53656 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 53717 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 53778 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 53839 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 53900 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 53961 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 54022 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 54083 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 54144 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 54205 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 54266 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 54327 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 54388 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 54449 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 54511 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 54572 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 54633 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 54695 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 54756 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 54817 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 54878 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 54939 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 55001 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 55062 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 55124 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 55185 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 55247 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 55308 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 55369 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 55430 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 55491 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 55552 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 55613 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 55674 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 55735 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 55796 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 55858 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 55919 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 55980 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 56041 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 56102 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 56163 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= ================================= ================== 150 29 97.7 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : TCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //