Array 1 4068031-4065842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024956.1 Pectobacterium atrosepticum strain 36A chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4068030 28 100.0 32 ............................ AGTCCGTCACGAACTTCAAAACGTTTAGCCCA 4067970 28 100.0 32 ............................ AGCCTGGAAGACATCGCCGGTCAATCGGGGCG 4067910 28 100.0 32 ............................ ATTTCCTTTTTCAGTGCATCCGTGCGGATTTT 4067850 28 100.0 32 ............................ CCGATTAGTGAATATCGGTGTCGGCACACCTC 4067790 28 100.0 32 ............................ AGATTAATAACGTCACGTTCCCAGGCGAGGTG 4067730 28 100.0 32 ............................ GCACATATCATCGCACGCATCCAAATGCGATG 4067670 28 100.0 32 ............................ TGGCGACACAGGAGATTGCCAGCCAGTCAGGG 4067610 28 100.0 32 ............................ GCAGAGACTATCGATACGGTCTGGACGGATGC 4067550 28 100.0 32 ............................ TGTGTCGGATCGGCGTCGGCGTTGCCGTCAGG 4067490 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 4067430 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 4067370 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 4067310 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 4067250 28 100.0 32 ............................ CTCGGCATACGCCAGTTGGGGAATAACAGAGT 4067190 28 100.0 32 ............................ GCGAATCGTACAGTGGCCAGCGAGCGACGGTT 4067130 28 100.0 32 ............................ GTTTGCAGGGTCAGACCACGACACCATCGCCT 4067070 28 100.0 32 ............................ ACCCGCAATTTGACAGACGAGCAACGCAAGCT 4067010 28 100.0 32 ............................ AGCATCACGTCGTGGGTCAAATACTGCGACAG 4066950 28 100.0 32 ............................ ATCGTTACACGGCACATAGATTGCGTCCGTAA 4066890 28 100.0 32 ............................ GTGTGGGCCAGCCGTACAGGTGATTACAAAGA 4066830 28 100.0 32 ............................ GGAAAGTTGATCTACACCGACGAGCCTAACGC 4066770 28 100.0 32 ............................ AGCGTAGACGCGAACTCATGCGCGAATTGCTC 4066710 28 100.0 32 ............................ TGTTGAGCTAACTGGTAGTTGCTGCGGTCTGG 4066650 28 96.4 32 ...........C................ GATCTACCAGCCTCAGACACATTAGCCCCCGC 4066590 28 92.9 32 ..........AC................ TGGCACGGATACATCCACTTCACTGACGCGCC 4066530 28 96.4 32 .........A.................. AGTGTAGTGATATAGATTGGCCGGCTCATTCA 4066470 28 100.0 32 ............................ CGGTGATGAGTGCCTGATTATCTTTGCCGATC 4066410 28 100.0 32 ............................ TGAACTAACACGCCATAAGCAATATCAAGCGT 4066350 28 100.0 32 ............................ TGTCGCCATAACCACCTGTAATACAGGCTCGG 4066290 28 100.0 32 ............................ ACAGATAATTGATAGAGAGACGTCAATTAATG 4066230 28 100.0 32 ............................ GTCACATCGTCGTCCCTTCCGAGGACTATGGA 4066170 28 96.4 32 ...........C................ GTATCCAGTGACCGACGAATCAGCGCTCGACA 4066110 28 96.4 32 ...........C................ TGCGCATTGTGGACAAAATCGCGCGGCGTGTT 4066050 28 96.4 32 ...........C................ TCGATAAGGTCTGGGAGCGTATCCGAGTATCG 4065990 28 100.0 32 ............................ GTTTACGATTCTGCTCACGTCACTAATTTCAA 4065930 28 96.4 33 .................T.......... CACGCGAGATCGCTGTTCAGGCCGAGGCAACCC 4065869 28 85.7 0 .....................C..TTC. | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTACGGAGGTACCCGTTCCCAACATCACAACACTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTTCCGTAATAGATAATAGCCATGACGCCAGCTTAATAAATCGCAGGCTAACTATTTGATAAGGAAAAATATAATCTTCAGAAAACTGATGAAAATCAGACTATCACAGTTGCATGTGAAAGATGATGACCGCAAAAAATATTACCTAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACAGATAGGGTTAAAAAAAGGGTTTTTACGAAGAAAATGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : CAGCACTCAGGCACTGCTGTCTGGTTATTATCGAGGTAGCACTGCGCCAGCGCTCAATGCGCTGTAGCTCTTAAATAACGTATTGTTGATGGCTTATTTTCGTAATATTTTCAAGTAACGGGTATCTTTGGGTGGGAATGGAAAATTGCAGATTGAATGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCACTTACAGGGAAATAGTTTGTTGACTTAAGTAAAATTCGAGGGAATGAGGCACTTGTGAAATACGATCCGGTTTTAAAAACGCTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTCTTACAAACGTTATGCACACCTAATCCTAATCAATCGTGGAAAACAGCCATGTTTGGCTGTACCGATCCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4078072-4078579 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024956.1 Pectobacterium atrosepticum strain 36A chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4078072 28 100.0 32 ............................ TGGCTGAATGAGGCCGTGGAGGCTGCGGCTAC 4078132 28 100.0 32 ............................ CAGTCGCTACCAAGCGCATTAAGTGCAGGGAC 4078192 28 100.0 32 ............................ TGGTCTTCACTCAACCCTTGCGCACTGGCCAC 4078252 28 100.0 32 ............................ ACCTGGAAGACGCACTACGCCTGAATCCGCTG 4078312 28 100.0 32 ............................ TTGCTTTAACAACCACCGTCTGAACTCACTGT 4078372 28 100.0 32 ............................ CAGCCAGCTTATCAGGGGGCCATCAAGCCATC 4078432 28 96.4 32 .............C.............. AAGCAAATAGACTCCATATTTGAGCGTAACGG 4078492 28 96.4 32 .............C.............. ATCGCAGTGATGAAGATCCCCGCAGCCTCCCC 4078552 28 75.0 0 ............GC......T.C..GGC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CCCCTCTTCGACTACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAGAAACGAATGCCAATTGGGTTTGACTGGGCGCAACATGATGGTATCCCCTTCACGCACGATCTCCAGTTCATTGACGCCTTCAAAGTCCATATCACGCGGTAAGCGAATAGCACGATTATTACCATTTTTAAATACTGAGACAATACGCATAATGCACCTCCTCTTAATACAGAATTCAGCCAGCCGCTAGCCTGACTAAAACATAGGTTAAGTATAGATTTGAATCGTTCTCTTGTATATCCGCGGCATATGTACGCACCTAACATAGGTCTACCGAGAATAGATAAAATCGTTGCCACAGGGTTGGCACCCTTTTTTCACGGACACTTGTAACTCATTGATTTTTAATATCGATTAAGCGCTATGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTTCTTTTAAAATTAGGTAACTACCGTAAAATAGGAAC # Right flank : CTTATCGGGGATACGTTGCTGGTACGACTCGCTTCAAGGGTGTTATTCCCCATTCAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAAATGCCCTGCCAAGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCGTCAGGCTATTTCCTAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTGGGATCGGCATTCTCATTAATCGTCAGCGCCGCCGAAGTATGTTTGATGAACACATGCATCAACCCGACCTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGAGCCAGAAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //