Array 1 308314-305600 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUQ01000296.1 Streptomyces viridochromogenes strain NRRL 3416 P006contig9.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 308313 29 100.0 32 ............................. GACCCCCAAGGGGTGGTCGGGGGACTGCCAGG 308252 29 100.0 32 ............................. ACTCAGGTTCCACTCGGACATCGGCGGGCTCC 308191 29 100.0 32 ............................. ATGAGCGCCGCTTGTGGAACGGGTGGGGGCTG 308130 29 100.0 32 ............................. TCCTCATCGGTCATGCGCCCGGGGTTCTGGGA 308069 29 100.0 32 ............................. GCACTGCTCGTCGGGGCCGGCATCGACACCGC 308008 29 100.0 32 ............................. TCGCCGCACCCAACTCGATCGACCGCCGCATC 307947 29 100.0 32 ............................. CCCCGACACCCTGTTCGACCTGCCGGTTCGCT 307886 29 100.0 32 ............................. TCCTCGACACTCATCTCGCCGTAGGTCTCCAG 307825 29 100.0 32 ............................. GACACGCGCGGCTGCCCCTGGTGCCGCATCGC 307764 29 100.0 32 ............................. CGGTCGGGCTCGGTGCTGCTGGCGGACGTTCT 307703 29 100.0 32 ............................. TTCCATTCAAGCCGATAGCGGGCATGTAGTGG 307642 29 100.0 32 ............................. GAGGGCCGTCTTTATCCGCAGTCCTTCCTCGG 307581 29 100.0 32 ............................. ACTTCGACGCCTACCAAGGTCGCACCTACGAC 307520 29 100.0 32 ............................. GAGGGGACGAGCTGCCTGGGGCGCAGAGGCCG 307459 29 100.0 32 ............................. GGGCAGGATGGCCAAGACGGACGAGACGGTTC 307398 29 100.0 32 ............................. GTCACCAGTTTCGCGCCACCGGGCGACGCGTT 307337 29 100.0 32 ............................. GTGCGGATCATCACGGGGAGCTGCATACCGTC 307276 29 100.0 32 ............................. CGGCGAGATCGACTCAGCGACACTCTTGATGA 307215 29 100.0 32 ............................. GTGTAGAAGAGGCAGTCGAGCGCCTCCGCCTT 307154 29 100.0 32 ............................. GTCAAGGGCGCCGTGGACTCGCTGCGCAGCAA 307093 29 100.0 32 ............................. GTGAACCTGGAACAGATCGGCCGGATGCTCCA 307032 29 100.0 35 ............................. CCCCCCGAGTCATGGGGCGGTGACGGCTCTGACGC 306968 29 100.0 32 ............................. AGTCCGGGATACGAGGCGGGACGTACGACGCC 306907 29 100.0 32 ............................. CAGCCGATCAGACCGCCGATGGCGATCCGCAC 306846 29 100.0 30 ............................. CACCGCGTTCTTCTCCCTCGAGATGGGGCG 306787 29 100.0 32 ............................. GCCTGCGGAGAACTCCCGCCCTGCGCTCACGA 306726 29 100.0 32 ............................. GGGTCCACCCCGATCGGGCTGGAGCTGGAGTC 306665 29 100.0 32 ............................. CCGGCGGGGCCGCCAGGCCGGGCCGCTTCGCG 306604 29 100.0 32 ............................. CGCCAAGAAGAGCGCGGCCACGCCCCGGTCCA 306543 29 100.0 32 ............................. GTGTCGTCCTCGACGGGCTCTTCCTCGAGTGT 306482 29 100.0 32 ............................. CCGGACTCGAACCCGGCGCTTCGATCGCTGGG 306421 29 100.0 32 ............................. CAGTACGGGCCGCCGTACTCACGGTTGGAGAT 306360 29 100.0 32 ............................. GGTCCGCCCGTCCTCGGTGCGTCCGACGTGGG 306299 29 100.0 32 ............................. GGTTCGGCCCTCGACTCCATCGGCGCGGTGCG 306238 29 100.0 32 ............................. CAGCGGTCCGAACAGCTCCGCGGCACGATGAT 306177 29 100.0 32 ............................. GACGACGCGCTCACCGCTCTGTATCCCGTGGT 306116 29 100.0 32 ............................. GCGGCCGTCTGCCGGAAGCTGATGCTGGACGG 306055 29 100.0 32 ............................. GATGCGCCCCTGGACCCCGCGATCCTCAACAT 305994 29 100.0 32 ............................. CTCGTCAAGGTGGGCGGCCCGGCCCTCGGTGG 305933 29 100.0 32 ............................. AACTGCCCAGCGAAGTCCCCAAGTGCCAGGGC 305872 29 100.0 32 ............................. CCGCGGTAGATGCCGTTCGGCGCCGTCCAGGA 305811 29 100.0 32 ............................. CCGATCAGGAACAGATCGCGCAGCTCGAAGCC 305750 29 96.6 32 ............T................ CGCCCCGCGGGCGGCGCCGGATGAGGGAGCCG 305689 29 100.0 32 ............................. GTGTGCCGGAACTGATGCGGGTGGATGTGCTC 305628 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 45 29 99.9 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCAGGTGGCCTCCGGACACAACTACGCGGACGCGGACGACGAGGAAGCGATGCCCTGGTGACCGTGATCGTCCTCACCAACTGCCCGTCCGGGCTACGCGGGTTCCTCACCCGCTGGCTCCTCGAAATCTCCGCCGGTGTCTTCATCGGCAACCCGTCGGCCCGCATCCGAGACGCCCTCTGGAACGAAGTCCAGCAATACGCGGGACAGGGCCGCGCCCTCCTCGTCCACACCACCAACAACGAACAGGGCTTCACCTTCCGCACACACGACCACGGATGGCACCCGATCGACCACGAGGGCCTGACCCTTATCCGCCGCCCGAACCCCAACACCCAGCCCACCAACAACACTCCCAAACCTGGCTGGAGCAACGCCGCCAAACGACGCCGCTTCACGAGAGGCTGAAGTCCAGAATGCCAGCCCTGTGCCAAATGTCGGAACCCGTGAAAGTACTGGAGAACCTGGCCGACCACGCCTAAAGCAGCAGGTTGCGAAGT # Right flank : GCGTCAAGTCCAGCCATGAACCCCGTTGTCGGTCAGGACGCGTTCGACGGTGACGTGGTGTGCGGCGAACCAGGCGGTGGCGCGGGTGAGGAAGCCTGCGCAGGTCGGGGCGGTCTCGTCGGGCAGGTCTTCGGTGTAGGCCAGGCGGGAGTGGTCGTCCAGGGCGGTGTGCAGGTAGGCGTAGCCGGTCCCGGTCCGGTTGCGTCGGCCTTCGGCGCGTCCTTGGGTGCGGTGGCCGCCGCCGTCGGGGATGCGGCCGAGTTTCTTGACGTCGATGTGGATCAGTTCGCCGGGCCGGGAGCGTTCGTAGCGGCGGACTGGCTCACCGGTGGCCCGGTCCAGCGCGGCCAGGACGGGCATGCCGTGGCGTTTGAGGATGCGGTGGGCCGTGGACGCGGCGATCCGGGTGCGGGCGGCCAGCCGCAGTGGTCCGATGCGGTGCTCTCGCCGTATCCGCACCACCTCTGCTTCAACCGTGGCGGGCGTCTGCCGGGGTGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 318039-321392 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGUQ01000296.1 Streptomyces viridochromogenes strain NRRL 3416 P006contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================ ================== 318039 29 100.0 32 ............................. GCCTGCGTGAGTTCGGCGTCCTGGGCTTCGTT 318100 29 100.0 32 ............................. GCCGGGCGGCTCATGCTGCCCACGGGCCTCAC 318161 29 100.0 32 ............................. GTCTCGTCATGAGTCAGGGCGATGTTGGGGCC 318222 29 100.0 32 ............................. ATCCCCGATCTCTTCGCGTGGATTGTCGGGGT 318283 29 100.0 32 ............................. TCCGCTGCGGCCCGGATGCTGCGCGCGAGATC 318344 29 100.0 32 ............................. CGCAGTCGGCCTCTACCTACGCGAGGGCTACG 318405 29 100.0 32 ............................. AAGGCCGACGTCTACGCCGCGACGCTCGCGAG 318466 29 100.0 32 ............................. CCGAACGCCCTCTGGCTGATGGCTGCTCCGAT 318527 29 100.0 32 ............................. GTATCCGGACGCCGCGAACGACGTGTTGGTCT 318588 29 100.0 32 ............................. CAGGCCCCTATGGCGGCTTCATTTGCCGATCT 318649 29 100.0 32 ............................. AGGTCGAGCTGGTCGGGCTGGTCTTCGATGCG 318710 29 96.6 32 ............................T GACAACCGTGCATCGGAGGCCGATAGTCCACG 318771 29 100.0 32 ............................. AACGGGATCAAGTGGCGGTCCCTGGGCAGAGA 318832 29 100.0 32 ............................. TCCTAATCTCGTCAGTTAGACGATAACTAGAG 318893 29 100.0 32 ............................. CACCCGGCCCAGATCCGGGTGACGGAGTCGTT 318954 29 100.0 32 ............................. TCCTCGGTCGGCAACGGGGTGCCGGGGTTCTC 319015 29 100.0 32 ............................. TCACCGACCAGCAGCAGGCAGCGCTCAAGCCG 319076 29 100.0 32 ............................. GACGAGCTGACCCTGGCGGGGGTGGTGGTGAA 319137 29 100.0 32 ............................. TCGGTCGGGCTCGGCTCCGGGCTCTCGGCCTT 319198 29 100.0 32 ............................. CGCGTCACCGGGAAGTTCCTGGAGCCCACACC 319259 29 100.0 32 ............................. TCGGTGGAGAGTTCTTCTTCGGTGCGGCCGTT 319320 29 100.0 32 ............................. GAGCTGGACACGCTCGCCGCTACCTTGCGCGG 319381 29 100.0 32 ............................. GGCGACCAGCCCCGCATCCGCATGCACTTCGC 319442 29 100.0 32 ............................. ACAGCCCTGACCCAGATGAGGGCGACGGGCGT 319503 29 100.0 32 ............................. AACCGGATCGTCGAGCCGCACGAGCGGATCGT 319564 29 100.0 32 ............................. TCGAACCTGGCCGCCACGGCAACATCGGGAAA 319625 29 100.0 32 ............................. TCGAACCTGGCCGCCACGGCAACATCGGGAAA 319686 29 100.0 32 ............................. GTCGGCCCGTACGTCCAGGAGCAGCGTCGGTA 319747 29 100.0 32 ............................. TGGGCGACGTCGTTGCTTTCGACGCGGACCAT 319808 29 100.0 32 ............................. GCGCCGAACAAGCCCGCCAGTGGGATGCCATC 319869 29 100.0 32 ............................. TCGGTGACCCGCTGCTCCAGCTCGGCCATGCG 319930 29 100.0 32 ............................. GATGTAAGTCGGTCTGGTACGGGTGAACTCCT 319991 29 100.0 32 ............................. AACAACTACAGCGCACGCCTCGGATTCCAGAC 320052 29 100.0 32 ............................. AGCACGGGTACGCGAACGGCCCCACCCGCATT 320113 29 100.0 32 ............................. TGGGTGGTGACGGGGCGGCCGTGCTGCCTTAT 320174 29 100.0 32 ............................. ATCCCCTGCCGGGCCGCCGGGTTGAACCCGAG 320235 29 100.0 32 ............................. GACGGCACCGCCGCATCCGGCTCCGGCTACAA 320296 29 100.0 32 ............................. TTCAATGGCGGAACGGCCTTGAGTTCGCCGGT 320357 29 100.0 32 ............................. GCGGTCGTCCTCGCCGTCCTCGGACTGCTGAC 320418 29 100.0 32 ............................. CGCGCCCTGCCAGTCCTGAAGGGCCGGGACTT 320479 29 100.0 32 ............................. AAGTGCGCTGAGAAGGACTGGGACTACAAGGG 320540 29 100.0 32 ............................. ACGGTCCGGAACGCGCAGGAGCGGGTGGCGGA 320601 29 100.0 32 ............................. CCGCGCGGGCACCGCTGGGCACAGTACGGCGT 320662 29 100.0 32 ............................. GGGATCGTCACGGTCTCGGCGTTGGAGGAACG 320723 29 100.0 32 ............................. AACCAGGTCTACGACCTCAGCCGTAGAGACGA 320784 29 100.0 32 ............................. CATGCAAGAGTGTGCGGTGATCGGCGCGGAAC 320845 29 100.0 29 ............................. AAGGCGAAGGACCGCATCAACAACACGGT 320903 29 100.0 32 ............................. GACTACCGCTCCCGCCGGGGCGAGGGCCCGGA 320964 29 100.0 32 ............................. CGGCTGGTGGTCACCCCGAAGATGCGCCGGCG 321025 29 100.0 32 ............................. CTGGAGGAGATGCTCCCGCGCGTCGGCGAGAT 321086 29 96.6 32 ...................T......... TTGCCCAGCTCCGGATCGTCGGCCAGCCGGAA 321147 29 93.1 32 .................A....C...... AACTTCGCCCGCTACGGCAGCCGCGTCGCGAA 321208 29 93.1 128 ..........................TG. CGGTGAGACGTCTGCGAGCAGGGCGGTCTACCTCCGCTCGCGCGGAGAGCACCGTTTCGATCCCGCCGGATCACCCCCGCGTCGACGGGGAGCACGTGCCGCAAGACGGGCACGCGATGTGCTGATGC 321365 28 75.9 0 ...........CGA....C..-..A...G | ========== ====== ====== ====== ============================= ================================================================================================================================ ================== 54 29 99.2 34 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTGCACACCTGCCAGCCAGACCGCCAGCCGCCGGCCATCCCGCTCACCACCCGGCAACGCCTCGGATATCAAAGCCCGTACGTTCGCGGGCAGCCACCGGTCCCACAACAGCCCCGCCACCGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAACCAGCCCTCGCTGTCCCGGTCATGCTTCGCCCACACCGTCCGCACCGACCCCCTGAGCCGATCTCCCAGCCCAGACCCGGACTCTCCGTTATGCGCCATCCCTGATACATACAGGCAGATACCGCCCGACAACTCCTCCTTCGACAAACCCGAACACCGTCGCGACCTGAGTCCGCACAGCTCCACGCATCGGCAGGCCTGCCTGACGGCGACGTACACTCCGCCTTCAGCCTCAAACTGACGACCAACGACCGGTAGATTTGCACCCTATGAGGGGAATGGCCGTCTCGGTGAAAGTACTTCCGAACCCCGCTCGGCAGTCATGACACTGCAGGTCACCGAGT # Right flank : GTTCCCGTGGGCCATGTACGTCCAGCAGGGCACCGCTTCAGGGGCTGAGGATGTGGCCTTCGGCGTCTACCAGCCGGCCGTCACCTCCGCCCTGCCGCCTGGCTGGGTCGGCAACAGCTCCGGGGTCGGCAAGCCCGCGATGATCGCTCCCCGCTGGGACGCCGGGAAGTATCTAGGCAACTCCACCGGCGGCTCCGACGCCGCCAACATGGGCGCCGCTTCTTTCAGTTACCTGGCCACCCTCGTCCACGGCACCAAATCGACCGCTCCCGAGCGCGGCGTGGCAGCGCACATCAAGAAGGGTGTAGCTCGCCCGAGTGACCTGATCGTTTAGGCGGTGAGGTCGTACTCGTTCTGGTAGCGGGCTTGGTGGACGCGTTCGTGTGCGTGTTGCACGTGGAAGGCCCGTTCACCGATGCCGGGATCACTCCACGCGAGTTACACCCTTCCGGGAAAGTCCTTGAGATGGTCGGTGAGTCGTTGGAGCGTCGTCCAGGACT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //