Array 1 632-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDF01000092.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.92, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 631 35 100.0 34 ................................... TTAAGACTCCGAAGATTGACCGAGGCGGCTCGAT 562 35 100.0 35 ................................... ATTATAACTACTTTGAGTATACCGAAGAGTTTTAT 492 35 100.0 32 ................................... AAAAGTATCGGCAAACGGATGATATGATTGAA 425 35 100.0 36 ................................... AACCCGACAGCTTTGCCACATCCGTTGCAATCCTTT 354 35 100.0 35 ................................... ATAAAGACTGGCAGGTAAGGAACGCTTTGGTTGAA 284 35 100.0 33 ................................... TATTATCATCTTGTACCTATGTAGAACCCGGAG 216 35 100.0 36 ................................... TACAAAGATGACGTAAGAACTTTGAAACAGGTTCAA 145 35 100.0 36 ................................... GCTGGAGCATTTGTCTCGTGAAGAGGCTGTAAAGGT 74 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ==================================== ================== 9 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TGGAACCGCATTTGAACGAGGAACAAAAAAACAAAAATGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 809-2311 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGDF01000148.1 Bacteroides fragilis str. DS-71 gbfDS71.contig.148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 809 47 95.7 29 ...A......A.................................... TTAAACAAACTTTCATATCAATCTAATGA 885 47 100.0 30 ............................................... CGATCACGGGCGGTACAATTGACTTCGCGA 962 47 97.9 29 ............................C.................. GTATATGAGATATCAATCCCGACAAAAGT 1038 47 100.0 30 ............................................... AAAGGTTTTCATTTGTAAGCCATTGTTTCT 1115 47 100.0 30 ............................................... GTCTTATACCTGACATTCAAATACATTTGT 1192 47 100.0 29 ............................................... TAAATCAGCGTTTATCAGTAATAGCGACA 1268 47 100.0 30 ............................................... ACTCTTTGTCCGTCTTTATCTCGACCGAAT 1345 47 100.0 29 ............................................... AATAAGGCATGCCATCATATGATAGATTG 1421 47 100.0 30 ............................................... ATCTTGTTCTTTTGAACGCAACCCTTTCAA 1498 47 100.0 30 ............................................... TTAAAAAAGGAGGTTGCAAAAGAAGTTATA 1575 47 100.0 30 ............................................... TATTTGCGAGAAAAGCAAGGATAGTAGATA 1652 47 100.0 30 ............................................... CCAAAGATCTTTATTCCAATTAGCATACCG 1729 47 100.0 29 ............................................... ACCAAAATGCTTACCATTACGCTGAAGGT 1805 47 100.0 29 ............................................... AACTTCTGAGAAGGTTTACGCATATATTT 1881 47 100.0 30 ............................................... TAAGCGTTCATAAAAGCAATATTAATCATA 1958 47 100.0 29 ............................................... GTAAACGCAGAAGTATCGACAGGTTGTGT 2034 47 100.0 30 ............................................... CAATTGACCATAAAAAGCAATATGATTACT 2111 47 100.0 30 ............................................... ATCGTCGTACGTTTGCCACACTGCAAAACC 2188 47 100.0 30 ............................................... AAAAAGGTAAAGAACCTTGCATCTGAAGTA 2265 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 20 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGCTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //