Array 1 284377-283836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPM01000001.1 Listeria monocytogenes strain CFSAN049207 CFSAN049207_contig_0000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 284376 29 100.0 34 ............................. CCTATTAATTTCGTGTTTTTACTGCTTAACATTT 284313 29 100.0 34 ............................. ATAGAATCATCGGAAATACGTATGCCGAACTCTT 284250 29 100.0 36 ............................. CATGATTTCTTTGTCGTTCATAATAACGTATTGATT 284185 29 100.0 35 ............................. GTTTTAAAAGTACCGCAATTTATTGCTGATTGGAT 284121 29 100.0 35 ............................. GGAGGAACAGCGACCGGTTTCGGTTCAGACATTAT 284057 29 96.6 35 ..........T.................. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 283993 29 100.0 36 ............................. GACAATGTATTATCAATTGAAGTGCTTGTAGAAACA 283928 29 100.0 35 ............................. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 283864 29 82.8 0 ......A........CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 9 29 97.7 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGATCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTAC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 88291-88853 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPM01000013.1 Listeria monocytogenes strain CFSAN049207 CFSAN049207_contig_0000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 88291 36 100.0 30 .................................... TGCCATCGGGCCACTATTGATGGGGATAGG 88357 36 100.0 30 .................................... TTCTGGGGACTTGTACTTTTCTTAGCAGTA 88423 36 100.0 30 .................................... TAGCCGTCCTCTTCTAAGTCAACCTCCTCA 88489 36 100.0 30 .................................... CAATAGAAAAAAGCTTCTTAGCTGATACGC 88555 36 100.0 30 .................................... GAACCTAGGTGACGAACCTAACGGAAAATT 88621 36 100.0 30 .................................... AATGCTTTGTGTGTTTCACTATTGTAATCA 88687 36 100.0 30 .................................... ATCCACAAATGTGAGCATTCCTTCTAATGC 88753 36 100.0 30 .................................... AGTGGACAAGGCGACTATTACGTTAAAAGT 88819 35 94.4 0 ..............................A....- | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGGAGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAGCCTAGAAAGATAAAAGAATCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXPM01000016.1 Listeria monocytogenes strain CFSAN049207 CFSAN049207_contig_0000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5 36 91.7 30 .........AG..T...................... TCAGAAATAAATATAATTTAGGTGAAGACG A,A,AA [9,11,16] 75 36 100.0 30 .................................... TATTATTTTTGTTTATTAGTTTATTGAATG 141 36 100.0 30 .................................... CTGCTTCTACAAACCCAAACAATAAGCCTA 207 36 100.0 30 .................................... AAGGTTTCGGGAATAGTAACCCCAACTCGA 273 36 100.0 30 .................................... AAAAAGCATTGGAATTGTACACATTAGACT 339 36 100.0 30 .................................... AATGGCTAAAAAGAGGATTAAAGACTTTGA 405 36 97.2 0 ...............................C.... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AGATG # Right flank : CCTGTTTTAACTGATTATATTCTAAATACGAGTAGGGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATTTAATTTTAAGTGACTGAGAACTATTAATAACTAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCACTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCAATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //