Array 1 127560-128164 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWC01000001.1 Clostridium cochlearium strain NCTC13028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 127560 30 100.0 34 .............................. AGTATTTTTTCTTTTGAAATATACTCTTTTATAC 127624 30 100.0 36 .............................. TGATAGCACTTATGACTATTGCAATTATAAATGGAC 127690 30 100.0 36 .............................. TCTGCTTTAAAGTTCCCTTTTCTAATAGCCAACCTA 127756 30 100.0 34 .............................. TTTTTTTATACTCTCCACTGTGCCAGTACCACAT 127820 30 100.0 35 .............................. AAAGTATTATTATAGGAGGATGATGTTTTATGAGT 127885 30 100.0 34 .............................. AACCTTGAAGATATAAAACCAAGTAAAGATTCAA 127949 30 100.0 36 .............................. TTATAAATATGGATTCGATATTAAGGTTCGTGTTAG 128015 30 96.7 37 ...........................G.. TTAATTATTGGATATACTAAAAATAGTAGGAGATATC 128082 29 80.0 22 A.....T.T.......T.-..........A ATAGTCTAAATTGTAATAGTAT T [128095] Deletion [128134] 128134 30 73.3 0 .C.T...C.......GA.....T.A....A | A [128158] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 95.0 34 GTTGAACAATAACATAGGATGTATTTAAAT # Left flank : TTTTTAGGATTTACTAAAGCAGCCCATGCATTACTACCATTACCAATAATGGAGTTTTTCCTATAAAGTATATGCCTTGCAGAGATTTATATAATGGATTTGGAATACTAACTACTTGTTGTAATGGTCTTACCAATGATTCATGTTGGCATAAATCATTTTTATCTAACATAGTAACACATCCTTTTAAATATAAACTATTTAAATTATTTAATAGATAAAAATTAAAATTTTATCTATTAGTATATTGTATTGATATAACTCAAAAAAGTTGTAATATTTTAACGAATATTAGTGAAGGATACAATATTATAGATAAAAGCTTTACCAGATGATTTAAAATAAAAGTATATTGTAGAACATTGATTTAAAAGGATTTGATTAGCTTTTTTAAAATATTTTTGCAAAAAATTAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATCCTTAATTTTAAGGAATGTGGATTTTACAGTG # Right flank : ATAATATTATGCAAAAGAAATTTACATTTTAAATCTAGTTATTAAATTCAATAGTATAAATAGTAATAGTTTTGGTAATGATATATATCACAATAATAAATATAAAAATAATTTAAGTATATTATGATGGAAGTTAAAGGAGAGAGAAATGAAGAAAAAATTAAAATTGTCTATTTCAGCAACTTATGAAGATTTAAAAGAAAAAGGAAGGAGAGGAATTGATGGTATCATTTATATAATTGAATTAACTCTAGTTATTACATTAATTTTAAAAATCTTTCAATTTATAAATTGAAAAATCTACTTTCTTTAAATCCTTTATACTATAGAAATATAATTAGTGTTATAATATGGAATAAGATAAAGCATTATGGTAAAATTTATATTATAATGAAAATATAAGGAGGTGAAAAAGTGAAGGTATATGAGTTGACACTAAAAGTATTTTTACTAAAAGATATTAAAAGTGATGAAAGTTTAGAGAAAATAGCAAATATAAT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 139601-141972 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWC01000001.1 Clostridium cochlearium strain NCTC13028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 139601 30 100.0 36 .............................. TTAGAATTTAATATTAATTCCATGTTGAATTCCTCC 139667 30 100.0 36 .............................. TGCTTGCTGGATGATTAGTAGGATGTGTGTATATAG 139733 30 100.0 35 .............................. CTCAAACTTGCAACTAGTAAAATAGCGTCTATAAA 139798 30 100.0 36 .............................. TAGTAATTTAATCTATATCTCTTTTTAGATTCTTCT 139864 30 100.0 34 .............................. TTTTTATTACCTCCTATGTTTTATTCACCCTTAG 139928 30 100.0 34 .............................. AAGTCCAATCCGCCTTGAGATTTAAAAACTATAT 139992 30 100.0 35 .............................. ATACTTTTTATATAACTTGTACTATCCCTGTGTTC 140057 30 100.0 35 .............................. TTTGGAAGAAGATTGGTTTTTCTTAACGTGCACAA 140122 30 100.0 35 .............................. TTCCAATAACAATCTATAAATCCCTTACCTATAGC 140187 30 100.0 35 .............................. ATATAATATGTATTACAGTATTGCTAAAAGCATTT 140252 30 100.0 34 .............................. ATTTCTACAAAACCTTGCTTTTTAAATTCATTAC 140316 30 100.0 34 .............................. ATTTCTACAAAACCTTGCTTTTTAAATTCATTAC 140380 30 100.0 34 .............................. ATGGTTACATGAGGGTCTAAAACATTTAAAACAT 140444 30 100.0 34 .............................. AAGATTGGAGGGAGATAAATGAAGTGTATGACAA 140508 30 100.0 34 .............................. CTTAGTTACTCAACTAACTAGCATAATTCAACTA 140572 30 100.0 36 .............................. TTAGAAAAAAATAATATACATACAATAGCAGAATTA 140638 30 100.0 36 .............................. AGTAACCTTAATCTTTCTACCATATCAAACAAACTA 140704 30 100.0 36 .............................. TGAAGATAAAACTTATTATATTGGAGAAGGAGCCTT 140770 30 100.0 36 .............................. CCCCATATATATCACCTATCTTTTTAGTATTATCTT 140836 30 100.0 36 .............................. TGCAGAGAATTGATGGTATAAACGCTTAGGAGGTGA 140902 30 100.0 34 .............................. CTGATGTTATGGAGTAAAGATTTGCTACAGGCAT 140966 30 96.7 34 ....G......................... ATAGTGCTTTAACAGAACTTTTTACATTTGCCGA 141030 30 100.0 37 .............................. ACAAATTTTAGGACATGATGATCCTTCAACTACACAA 141097 30 100.0 34 .............................. TATTTAAATATAAAATTATCTACATTGTTAATCC 141161 30 100.0 36 .............................. ATAGTTGGAGAGAAAAAGAAACTAAGGCATCTATAG 141227 30 100.0 33 .............................. ATTGCCGACGTCGGCAACATGATAGAGGAAGAA 141290 30 100.0 34 .............................. CTAGATAATACGGGTAAAATAATAACAATTGAAA 141354 30 100.0 34 .............................. GATGCATTGGATGAAGAAATGAGTTTTACATTTG 141418 30 100.0 36 .............................. AAAACCACCTTTATGCATATGCATTTTATCCCATTT 141484 30 100.0 34 .............................. TTTAATGTTGATGCATAATCTACTCTACATATAT 141548 30 100.0 36 .............................. AGCTAGAAAAAGACATAATGGATATAGAAAGAGAAA 141614 30 100.0 36 .............................. ATTAAATACTACTTAGAAATACTACTTAGGAGGTGT 141680 30 100.0 36 .............................. ACTATTTCAAATTCTGTTCTTAATCCCATCATCATT 141746 30 100.0 36 .............................. TATTTTCTTTGATCTTCGTAATTCCAATTGTCCTCT 141812 30 100.0 36 .............................. TCTAATTGAGGATTAACTACTAATGCTGTAGTGCCC 141878 30 100.0 35 .............................. AACAGCTAAGGCACAGAAAGATTTACAAGACTTGA 141943 29 83.3 0 ..............-...T....C...T.C | A [141960] ========== ====== ====== ====== ============================== ===================================== ================== 37 30 99.5 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTTAGTTTAAAGGAGAGAATGTAAATGGGTAAAAATTTTAATTATAATTATGCATTTCTTTTTTATGATGTCAATGAAAAAAGAGTAAATAGAGTGTTTAAAACCTGTAAAAAGTATTTGTCACATTTTCAGAAGTCTGTATTTAGGGGAGAGCTTACACCAGCAAATTTTATATTATTAAAAAAGGATTTAAATAAAGTAATAAATGAAGATGAAGATTTTATATGTATAATAAAACTTATGAATAATAAAGTTTATGATGAAGAAATATTGGGAAATCCACATGGTTTAACAGGAGAAGACTTAATATTATAGATAAAAGTTTTACCAGGTGATTTAACATAGGAATGTACTCTAAAGTATTGAGTTATAAGGGTTTATGTCCTGTTCTTAAATATAGTTTTCCAAAAGATAAATCGCCTGGTAAATTTTCAATGAAACATTGAATTATCAATGGCTTTATGCTATTCTTAATTTTAAGGAATGTTGATTTTACATTG # Right flank : CATTAATTACCATTTTAGTTATTTTGATGAGTATATTTATACAAATAAAAACTAAATATAAAGTTGAAAAATAAGGGGTCTCAATGCAAAAGACTCCTTATTTTTTATATTATAAGTTGTAAATTATCACAGAAGTTTAGCATTTGAATTTTTTTAGGGCGGTTAGCCCGTTGATTTATAAGATTTAATAAAGAATAATTAGAAATGTTGTATTTTCCGATTTTTACTGGAAATTATAGAGAAAAAATTTGCATAATAAAAGCATCCTTTTTATAATAGTTTTGCGACAAACTCAATAAAAAGGATGCTGATAAAATGAACAAAAGTTATTTAAAACAATTACTCACTTATATTAATAAAGTATATGATATTGGCGAAAAAATCAAGACCTTAAAAGATAAAAAAGTAAAATCACCAGTAAAAATTTCAACAATTACCTTTGTGGTGTTATTTGGATTTATGCTTCAGATAAGAAGTTTCAATAGATTAGAACATTGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 146739-147485 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWC01000001.1 Clostridium cochlearium strain NCTC13028, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 146739 30 100.0 35 .............................. GTATGTATACGGGTTATATATGCACCTTTCGGTGT 146804 30 100.0 36 .............................. AATATTCCTGAAGTTTTCTCATCAGTAAATGGTATC 146870 30 100.0 36 .............................. TCTACGTATAAGTTATTTAAAGCCATCTGTGAGCTC 146936 30 100.0 36 .............................. GATCCATATTTACTCCTTATATCATCAATTGAATAC 147002 30 100.0 35 .............................. TATTGTCGATATAGCTTATAATATTTCTTAAAAGT 147067 30 100.0 35 .............................. TTACTGTTGTTAAGGAAGTATGTTTAACAATATCT 147132 30 100.0 35 .............................. TCTTTTATTACACCTTTAGAACCATAGTCATATCC 147197 30 100.0 34 .............................. ACTAACTAACCTATTTATTAACTCCAGCATCTAA 147261 30 100.0 34 .............................. GCACAATCTTTACATAGCTGAGTAAGTCTTTTAC 147325 30 100.0 36 .............................. TTAGATGGATTACATGAGGATATAGTAAATAAGTAT 147391 30 100.0 35 .............................. ACAGAAGGTAGCATCTATACAAAAGATAAAATGGT 147456 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 100.0 35 GTTGAACAATAACATAGGATGTATTTAAAC # Left flank : ATAAACCCTTTTAGAAATGAAGTGGTTTTAGGAAATCTAGATGATCTTTTAAATACAGAACTTATAGCTAAAGATGTAAATTATATACCCTTTGATAATTTAAAAGAGCCAATGGAAGTAGAAGCTAAAATAAGATATTCTCAAATTCCTTCAAAGGCAGTAATAACTCCTCTGGAAAATGATAAAGTAAAGGTGAATTTTAATGAAAAGCAAAGAGCTATAACTAAAGGTCAATCTGTGGTTTTTTATAAAGATGATTTATTAATAGGCGGAGGAATAATTGAATAGAGTTTCTTTTAATACTTATATATAAAGTAATATTATTTACCAGGTGATTTTAAATGGTAATATATCCTAAAGTATTGATTTAAAAGGGTTTATACCATGTTTTCCAATGTGATTTTCCAAAAGTCAAATCGCCTGGTAAGTTTTCAATGAAACCTTGAAATATCAATAAGTTTATGGTATTCTTAATTTTAAGAAACCTTGATTTTACAGTG # Right flank : CAGCATAATATCTTTGAATTGTAAAGTAAAAAAATACCGTATATTCTATTTGGAATAATACGGTATTTTAATACTATTTTTAAATTGATTTTTCTTATGTTTTAAAGGAGCTAACCAACAAACTGATAATTATCACAGAGTTTTACTTTGCTTCATCAATCTTTTGGATGGTATCTTCACGAATAGCTTGTCTTAAAGATTTTAAATAATCGGAGAACGCAACCTTATCATCTGCGTAGGTTAGATTGAGTTCAAATTCTTTGGGAATCCAAGTAGACAAGTCTGACATATTGTGCTGAATCAATGCTTCAAGGCCATCAATGGCTTTATAAATTTGAGATTCAACTGTTTTGCGTTCTGCCATTTCTTCATAAAGTTCTCGCATTTCTACTGCATATTCCTCTGGCAAGGAATCAACCCAGTTATAAAGCAGATTTTCTTCCATCAGCTCGTGGTCTAGGTTCTTTTCAAAAGTAGGAATATCTCCAGTAAAACATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 475344-473783 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWC01000001.1 Clostridium cochlearium strain NCTC13028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 475343 29 100.0 37 ............................. TATTATGCAAGGATTGTTAAATGGTATAACCAATATG 475277 29 100.0 40 ............................. TAACATAGAAATTGGGTTAGATAGAAAGGAAATATTAGAG 475208 29 100.0 38 ............................. AAATTATCTTTTAAAAAATAATTTAGTTCATCTTTATG 475141 29 100.0 36 ............................. TTTATCAATGTAGCAACCCTAAGACTAAAAATTACG 475076 29 100.0 37 ............................. TAAAATTTGTAACTATAGATTTTATAGCACTATCTTG 475010 29 100.0 38 ............................. TAATGCCAAATACCTGGTCATAATCATCACTGTAAAAG 474943 29 100.0 38 ............................. TTGTTCCACTTGAAGATAAATTTAAAACTGTTGAAGAG 474876 29 100.0 36 ............................. AAAGTAGTTTGAATATTTCTAGTCCAACACCTCTGG 474811 29 100.0 39 ............................. CAGTGCTTGGTGTAGTGAAAATGGATTGAAAGCTTTAAG 474743 29 100.0 36 ............................. ACACTAAGGAGGAATAAGAATGAATAATTTAATACG 474678 29 100.0 36 ............................. AAAAGAACAGTTGACGGATTAATCGCTACTGCTAAG 474613 29 96.6 37 ................A............ AAAGACGTAATATCTGCCAAATGCGACGCTGTTTCCT 474547 29 96.6 38 ................A............ GCAAAAGATACTCTTTTCGGGAATTTCATTATTCTATT 474480 29 96.6 38 ................A............ GACGATGACTTAAGCTTCTTATTGCCTACAAATTGCAT 474413 29 96.6 36 ................A............ TGTATGAAGTATAGAAAATTGTAAACTTGTAAAAAT 474348 29 96.6 38 ................A............ TAAGCTATTTTACTTAGTATAGAACAGCCTACCCCATT 474281 29 96.6 39 ................A............ ATAAAAATAGTGGATTAGTTAGAAGTGTATGGGTTCCTT 474213 29 96.6 37 ................A............ ACAGTTTTCGTATCAAACCTAATTCATAAAAATTAGT 474147 29 96.6 36 ................A............ TGCTATCGCAAATAAAATACGTTGTTCTGTAGGTGA 474082 29 96.6 40 ................A............ TAACAAAACTCCCAGTTCTGCCGAACACTCTGTCATTCCG 474013 29 100.0 39 ............................. TGCCATACGTCTAATGACATCATTAAAGCACCTTTTCTG 473945 29 100.0 39 ............................. TTTATTTGAGTAATCATTTCCTTTGTTTCCATACTTATG 473877 29 100.0 37 ............................. TAGTTAGTTTCTACTTCTTGGAGCGTAGCGGTCGCCG 473811 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 24 29 98.7 38 TTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : ACGCATATGTTTGCTATATTAGTTTACGATTTTGGTGAAAAAAGAGTGGGCAGAGCTTTAAAAACTTGTAGAAAATATTTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATAAGTGATGCTAATTTAAAAAAGTTAGAAATGGAATTAGATAGAATTATGCATAGTAATGAAGATTCGGTAATTATATATAAGTTTAGAAGTACTAGATATACTACAAGAGAGGTTATAGGTCTTTCAAAAAATGAACAAGATATATTTTTATAGAAAATTTCGGAAACCATCGTTACTTGTTTTAATAATGATTATTGGATAAGAATTATTTACAAAGTCGTCGACCCCCAATCCTGTAAAAAACCCGGGAGGTCGACGACAATTTTTAATTGGCTCATAAGTATTGATATTATTGAGTTGAAGCAATATTTACATATTTTTGTTTACACTTTGTTAACAATAGATAGTTTTAACAAAGTGTGTTATAATGCAGATATAATGGG # Right flank : CATAATAAAAAAACACCTTACTCCATACTATAGATTAAAAAATTACATATGGAGTAAGGTGTTTTTAATAGATAAATAAATGAACCGTCCCCTAAAAATTTACCCCCCAGGTACTCAAGTTATTACTATTTCCTATCCAAATAGGACAGTTCATGGGAATGAAATCAAATAATTCCTCAACATTATTATTAAACATACGTATACAACCTAGGGATGAATCGGTTCCAATGGACCAAGGACTATTATTTCCATGAATTCCATACATAGAACCACCATCTATTGACAGTCCAAGCCATCTTTTCCCTAGAGGATTTTCAGGCGTTCCACCAGGTACAACTTGTCCTGTTCTTGGGCTAATCCAAGTAGGATTTATAAGTTTAGATACAATTGTAAATTTACCTTCAGGAGTATAAGAAGGTGAAGCACCTGCAGCTATGGGATATTTCTTGTGTACTTTACCATATAAATATACTGTTAAAATTCTAGTATCTTTATTTATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : TTTTTAGAATAACTATAAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 5 484784-484487 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWC01000001.1 Clostridium cochlearium strain NCTC13028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 484783 30 90.0 37 C.........G.......A........... CCCAGTTATAAATACACTGGTACCTACTTCTTTCCTA 484716 30 96.7 36 ..........G................... CGTAACTAATAGGAATGGGTTAGACATAGCAACTAA 484650 30 96.7 36 .A............................ CAAATATCCTCTATGTCTTTTTCAACTTCTATATAT 484584 30 100.0 38 .............................. CGAAGCTACAGAATAAGCCAAGATACAAAAGATAAAAC 484516 30 93.3 0 .....................A....C... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 95.3 37 AGTTTTTAGAATAACTATGAGGGATTGAAA # Left flank : GCAACCTTTTCACTTAAATATTTAGCAGCATTTATTGAACTTAAATTTAATGATAAATTTAGTATTTCATTTTCTAATCTTTTTGTTTTTTTAGCTTTAGGCATTAAAAAATCAAAGTTTTCTGCAAAGGTTTTATGACTACAAGCATCATTTACACAAAACATTTTTCTGTTAGTTAATTTTAGTATTACCTTATTGCCTTGAATAGGTAAATCTTGAAATTGTTTAACATATCTTGAATGAACCTTAGTTGAAGGTGTTCCACAAAATGGACAAATAACTTGCTTTCTATTAGAAATAACATTTGTATAAAAAGTATTATCTATGATTTGATGATTAACATATTCAAGATTTTTATCTAATAATTTTATAAATTCATCCATAAAAAACTCCTTAATATTATTAAATTATTTCAAATTTTATCATAAATTTAACCTTGGTTCAACAGACATTGGAAAGAACCATTTTAATCTTGACATTTATGGCATTTTCTGTATCTC # Right flank : TTAATAGCGGTTTAACGACCGCTTTATTTTTATGCTTGGTTTTTAGAGTAATATAAATAGACTTTATGTTTAAAATTTTAATAGAAAGTTCTATTTTAATAAGTAAAAAATCACTATTATTAGAAGGATTTACAAAAATAGTGTGGAAATATAAATATGGTAGTATATGTTATACTCATATACAAATTATGACATAAGCGAGGAGATTTCATGAGAGCAAATTTAGAAATAAGTTTTTCAGATAAATTGGAAGTACCAATACAATATAATTATTTAGTTCAGGCTATGATTTTAAATTGGCTTGGAGACGAAAAATACCAAAAATTTATCCATGATAAAGGTTATGAATACAATAATAGATCCTATAAAATGTACACATTCTCAAAATTATATGGGAAATTTTCTGTAAATTCAAAAAATGGAATCATAACATTTTTTGATAAGGTAAATCTTATAGTATCATCTCTAGATACAAGATTTATACAATATTTAGCTTCTAA # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTTAGAATAACTATGAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 6 571172-570028 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAWC01000001.1 Clostridium cochlearium strain NCTC13028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 571171 29 100.0 36 ............................. TTTATACAATGTCTGTAATGCACTTATCTCCGCCTG 571106 29 100.0 36 ............................. AGCTACAGTGACCAAGAAATCGACTTCTGATGTTTG 571041 29 100.0 35 ............................. CTATACTGTTAAACGATTACTGTATTGATATATAA 570977 29 100.0 39 ............................. AAATCTTTTGCCAAATCAGTTTGCTTAAATTGAAATAGA 570909 29 100.0 36 ............................. GATACATTACAAAGATTAGATGATGCTCAAGGTGGA 570844 29 100.0 35 ............................. TTTGTAGAGGCAGTGCAAGATTTGAAGGTAAATAC 570780 29 100.0 38 ............................. TCGGATATAAAGGCACAGCTATGCACTAGAGTAAGTTT 570713 29 100.0 36 ............................. GCTAAAGATGGAGCTTACAAGTACAATTACAAAAAA 570648 29 100.0 36 ............................. TTTTCATATGTTTTTTAATGGCGTTACTTACCCCAG 570583 29 100.0 38 ............................. TCATTTTATCTCCTCCTTAATTGTTTTTAATGCTACCT 570516 29 100.0 36 ............................. AAAAATGCAGAATCAGACGCAGAAAGAAATTCCGCT 570451 29 100.0 38 ............................. TCGGATATAAAGGCACAACTATGCACTAGAGTAAGTTT 570384 29 100.0 36 ............................. CCTATGGAGATAAATTTGGAAATAGAGTTGGAACAA 570319 29 100.0 36 ............................. TATTTTTGTGATGCTTCTGATAAGTCCATCACATCT 570254 29 100.0 38 ............................. CTACTGTATTTCAAATACTTTTTAACATGAAAATAGGC 570187 29 100.0 35 ............................. TCATAATCTGCAACTGTTAAGAGGAAAGGCTAAAG 570123 29 100.0 38 ............................. TCTAATGTTTTGAAGTAGTAACCACATCCCCAATAAGG 570056 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 18 29 100.0 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : TATAAAGCATTAAAGGCTTGGTGGTGATATAATGTTTGTAATACTCACATATGATGTGGAAGAGAAGAGGGTAAATAGAGTTAGAAAATTACTTAAAAAGTATTTGACGTGGACTCAAAATTCTGTTTTTGAAGGTGAAATAACAGAAGGTAAACTTCATAAGTGTTTATGTGAAATAGATAAGATAGTAAATAGAAATTCGGATTCAGTATATATATACATTGTAAAAAATTCTAAAAATATAACAAAAAGTGTAATAGGAATTGAGAAAAGTTTTAACGATTTATTCTTGTAAAGTAAAGTTTTATTTGTAAATCTGCAGTAAAGGTAAAATTTAAAAAAACTACTTCTAAGTATTGATTTAACTAGGTTAGAGGCATATTTTTTTAAATACCTAAAAACACTATCGAAGGTTTACTGCAAAAGCCCTAAGTTTATGATATACTTGATATTGAACGAGCTTAGTGTTTTCAATGGGTTTATTGTATTTAAAATTTAGG # Right flank : AGTATCAGTTAGACGATCGTTGTTAAAGTAAATTGTGTTTTATATTAACGTAAGCGTCAAAAATTAAGTATCTAGAAAACATACCCTCTCATTGATAAACTTAAGTAAAAGATTATCAATGGGAGGTTTACTTATGTATAAAAAATTAGATAATGATGCTTGGGAGGAATATTTAAATAAATTTAACTCTGTTAAAGATACAATAACAGTGAAAGATTTCTGTGCTGAGAATAACCTTAATAAGAGTCAATTTTATTACCATAAAAAAAGAGTAGAAAAGGCAATTGAAAGTAAAGAACCTGTTTTTCAGCCTATTTCTTTGAATAGTAAAATTGATAATACTAAAGAAAATAAATCTACATTAAAAGAAGTAAAAATTAATGTAGGCAATGCTAATATCCTTATTCCTGTTAGCGAAGCTACTTTAATAACAGCAATAATTAAGGAGTTAATTCTAAAATGTTAAATATAGATAAGGTAGAAAAAGTCTATCTTGCCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //