Array 1 40900-39407 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMV01000014.1 Escherichia coli strain MOD1-EC5249 MOD1-EC5249_14_length_117216_cov_25.4057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40899 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 40838 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 40777 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 40716 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 40655 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 40594 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 40533 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 40472 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 40411 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 40350 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40289 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40228 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 40167 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40106 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 40045 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39984 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39923 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 39862 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 39801 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 39740 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39679 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39618 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39557 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39496 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39435 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68401-66603 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXMV01000014.1 Escherichia coli strain MOD1-EC5249 MOD1-EC5249_14_length_117216_cov_25.4057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68400 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 68339 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 68278 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 68217 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 68156 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 68095 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 68034 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 67973 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 67912 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 67851 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 67790 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 67729 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 67668 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 67607 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 67546 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 67485 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 67424 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 67363 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 67302 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 67241 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 67180 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 67119 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 67058 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 66997 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 66936 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 66875 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 66814 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 66753 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 66692 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 66631 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //