Array 1 82285-83442 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021523.1 Neisseria meningitidis strain 98-182 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 82285 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 82351 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 82417 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 82483 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 82549 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 82615 36 100.0 30 .................................... ACGGCGGTGGAAACGGTTTTCATAAAATTT 82681 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 82747 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 82813 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 82879 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 82945 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 83011 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 83077 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 83143 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 83209 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 83275 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 83341 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 83407 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //