Array 1 103839-105024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRJ01000015.1 Salmonella enterica strain CVM 43792 43792_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103839 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 103900 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 103961 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 104022 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 104083 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 104144 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 104205 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 104266 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 104327 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 104388 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 104449 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 104510 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 104571 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 104632 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 104693 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 104754 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 104815 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 104876 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 104937 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 104997 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121694-123309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRJ01000015.1 Salmonella enterica strain CVM 43792 43792_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121694 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 121755 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 121816 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 121877 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 121938 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 121999 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 122060 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 122121 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 122182 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 122243 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 122304 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 122365 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 122426 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 122487 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 122548 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 122609 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 122670 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 122731 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 122792 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 122853 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 122914 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 122975 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 123036 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 123097 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 123158 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 123219 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 123280 29 100.0 0 ............................. | A [123307] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //