Array 1 1337-911 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOCK01000152.1 Xanthomonas vasicola strain Xvh-L Xvh_152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1336 31 100.0 34 ............................... ATCACGTCATCCATCGCATCGATATAACGGGCCG 1271 31 100.0 37 ............................... GTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATG 1203 31 100.0 35 ............................... AGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAA 1137 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 1072 31 100.0 35 ............................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 1006 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 941 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== ===================================== ================== 7 31 97.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAACAGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGAGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGTTTGATCTTGCAGATTTGGAAATGTGGGATAGGTCGCGCCCTCACGGGCGCGTGGATTGAAAATTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAAGTCGCGCCCTCACGGGCGCGTGGATTGAAACTTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATCGTCGCGCCCTCACGGGCGCGTGGATTGAAACATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTAGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCCGTCGCGCCCTCACGGGCGCGTGGATTGAAACTCCGCCAGGGCGTCAATATCGGCCTGGGTAAACCGTCGCGCCCTCANNNNNNNNNNTGGATTGAAACGCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCA # Right flank : ACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1994-1438 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOCK01000152.1 Xanthomonas vasicola strain Xvh-L Xvh_152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1993 31 100.0 34 ............................... TGCGCAGTCAGGGGACACGATCGGGACTTTCGTT 1928 31 100.0 35 ............................... CTGAACTTAAGAAGCAACTATTTAACCAATACATC 1862 31 100.0 34 ............................... AGCGAGTCCGAGATGTTTGCCAGGGTGGTGTTGA 1797 31 100.0 35 ............................... TTGTTTGATCTTGCAGATTTGGAAATGTGGGATAG 1731 31 96.8 35 ..............................A TTTCCATAACTTCGATGCTCTGGGGCGCTCTGCAA 1665 31 100.0 35 ............................... TTGCCAAGGTAGTAAGCAACGGCGGCCGGGTTATC 1599 31 100.0 35 ............................... ATCACTGGGCTGGCGGGAAAACCAGTCAATGGGTA 1533 31 100.0 34 ............................... CTGCTGTGCACGTCGCTCAGCTGCAGCGACTGCC 1468 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 9 31 99.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GCAAGTCGATGAAGGCGAACTCCACGCGGC # Right flank : TCCGCCAGGGCGTCAATATCGGCCTGGGTAAACCGTCGCGCCCTCANNNNNNNNNNTGGATTGAAACGCGCTCCACGCGGTCACGCTCTGCCTGCTCAGCAGTCGCGCCCTCACGGGCGCGTGGATTGAAACATCACGTCATCCATCGCATCGATATAACGGGCCGGTCGCGCCCTCACGGGCGCGTGGATTGAAACGTTGATCAATATGGCTCGGCTGCGGAAATAGTGGATGGTCGCGCCCTCACGGGCGCGTGGATTGAAACAGGCACGAAGGCGCCCGGCGTAGCCTCGCGCTCAAGTCGCGCCCTCACGGGCGCGTGGATTGAAACCATACAGACCCTGCCCCCTCAATGCGCACTATATGTCGCGCCCTCACGGGCGCGTGGATTGAAACTGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGAGTCGCGCCCTGCCGGGCGCGTGGATTGAAACAACGGCCCGTTGATGATTCGGCACGTGGCGCAGGGTCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23-2229 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOCK01000142.1 Xanthomonas vasicola strain Xvh-L Xvh_142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 23 31 100.0 33 ............................... ATAGTCATCAATGGGTTGCCCAATGGGCTCCAT 87 31 100.0 33 ............................... ACCCGAATAATCCAATTCTGTGCTGGTCTTGCC 151 31 100.0 35 ............................... CGGAATGCACCAGTGTGGAACCAAGGGAATGGCCC 217 31 100.0 34 ............................... TGATAGCCCGTCACAGTAACACCAACACTTGATT 282 31 100.0 34 ............................... TGCGACTTCAGGGGCCGCAAGTACTCTATGACCA 347 31 100.0 35 ............................... TTGGTAGCTGTTATCTCGGTACAGAGGCATACCGG 413 31 100.0 35 ............................... TCTCTATTGGTTGGGCTTGCGTCGGTTGGGTTACT 479 31 100.0 35 ............................... CCGACGAACGCATACAACAGATCGCAAAGATCGCC 545 31 100.0 37 ............................... GGTGTCAGTTGGCCGTGCCATTAGGCAGCCTCCGCGA 613 31 100.0 37 ............................... TTTACGCCTGAGGGCAAGACCATCGAGCAGTGCGATA 681 31 100.0 34 ............................... TGTGCACCTTCTGCAACCGGGGCGGCTGCATTGG 746 31 100.0 35 ............................... CGCCGGTATGCATCCTTTGCAAAAGTCATTACAGC 812 31 93.5 36 .......T..A.................... TCCGCCAATGTGGCTCAGTCTGTGGAGGCTGGCCGC 879 31 100.0 36 ............................... CATCCTGACCGACGCCGGTCCGCGCATCACGGAGAG 946 31 100.0 34 ............................... AAGCTCGGCGCCGGTTGTCGGGATCGCGATTGGC 1011 31 100.0 35 ............................... ACCATTGTGCTCATGTAGGTACTACGGGCGGCACT 1077 31 100.0 36 ............................... CTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG 1144 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 1209 31 100.0 36 ............................... CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCCC 1276 31 100.0 35 ............................... GGACAGGTCGTCCGATGTTGGAACTTTCCGGCCGT 1342 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 1408 31 100.0 36 ............................... ATTGTCGTGATCGCCAAGGCTGTTATCCGCGCTGTA 1475 31 100.0 35 ............................... AGGAGCTCAATGCCCGCCCAATCGGCCGGATTAAT 1541 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 1607 31 100.0 35 ............................... CAGAGACCGTGCGAAGAGACGAACGCTCGAGAGGA 1673 31 96.8 36 .G............................. CGACCTAACCCTGTTACGCCTAGGCCTGCGCCGTGG 1740 31 100.0 33 ............................... AAGACTTGGTACTTTGATGAGAGTGCTGAGGGA 1804 31 100.0 36 ............................... CTGAGCCCGTGCCAAGTGACTTACCTGCCAAAGGAA 1871 31 100.0 34 ............................... GTCGCGGCGGGGAAGTACCCAAATAGCACGGAGT 1936 31 100.0 34 ............................... CGGGGACTTTGAAGATGCAAGGCTTATCGAGTGG 2001 31 100.0 36 ............................... CGCTCTTGGTGTATTCAGTTACGACCGATGCAACAG 2068 31 100.0 34 ............................... TATGCACACTACTGGAAGGGTGCACATAGCCCGC 2133 31 100.0 35 ............................... CTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC 2199 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 34 31 99.7 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAGCCCAAGGAGGTAAATGGCAG # Right flank : ATAACGTCGCGTGGCAAGCCCCTGTAGCTTGATCTGTAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //