Array 1 316050-317259 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000014.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_14chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 316050 30 100.0 35 .............................. TTGTAAATTTCGTCGGGCGTGATGCCGTGCCGCTG 316115 30 100.0 35 .............................. AAATTTTATGAGACCCCATATCAACATCCGCAAAA 316180 30 96.7 35 C............................. TAATACAAATAAAGACGTCGGACAATCTCCGACGC 316245 30 96.7 37 C............................. TGATGATTAACCAAGGCTTAATGCGCTATCGGTCCGT 316312 30 100.0 36 .............................. GGAGTTGAAGTGTACAAGGAGAAAGAGGTGAACACA 316378 30 100.0 35 .............................. TTCTCGAAGTTCGAAACCCGAATCAAAATAGGCTT 316443 30 100.0 37 .............................. TCCAGCACGACCGACTTAACTGCGGCGTGCGTTTTAT 316510 30 100.0 34 .............................. CGCGGATAACGGTCCGTATTTCACATATACGTCA 316574 30 96.7 37 A............................. CGGTTGTTCACCTCGCAAAATGCGAAGCAACGTTTCC 316641 30 100.0 36 .............................. ATGGTCTGCGACTTGACATAGCCTTCGTGCCGCGCG 316707 30 96.7 35 C............................. TGAGTATGAGTTTTCCCCTGATTTGGACAAGCAAT 316772 30 96.7 34 T............................. GCGTTGAGGTCATTTCGAAATTGACGATCGAATG 316836 30 96.7 37 T............................. ATGTGCTGGTGTGTCCGCTATTGACGATATGCCGGAA 316903 29 93.3 36 T.....................-....... ACAGTACAAGAAATTGCTCGTGAGGCTTTAGTGCGT 316968 30 100.0 34 .............................. CGAGGGAAGTAGAGTTTTTTGACCCATACGACGC 317032 30 96.7 34 A............................. TTTAAATACTCTACCCCTATTCCTTTTCCCATCT 317096 30 96.7 38 T............................. GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTAGGA 317164 29 86.7 36 .T..................A....-...G TATTTCCGGCGTGGAGATGGGATGATATGGGATTCG 317229 30 86.7 0 .T..................A....A..G. | A [317239] ========== ====== ====== ====== ============================== ====================================== ================== 19 30 96.9 36 GGTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : TATGTCTTTATAAAAATATGATAAAAAATCGTTAAAAGGTTACATAATGATGTGATGTAAAAATCATGAGTATTGTAAACACTTCACATATGAAATGGTGACAGCAGGAACGGTAAAACAATAAAACAGATAGCAATGAATGAGCCAGAATAATGACTAACGATAACATGCCTAGAAACAGCTTATTGCCAGCACTCAGCCGCTTTTTATGAGGATATAGAGGGAACACAGGAGGTGTCTGCAGCCGGTCTTTTCTTTTCTAATGAATACTCAGTGGTTAAAAATTTTGAATCAACAATAGATGTTTGAATTCATTATAGCAACATATATTTTTGTCGTCGATCCTTAATAGCGCACAAACTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCTACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGG # Right flank : CACTGACAATCTATATCCAAAAGAGCTAACACTGATAATGATCCCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTGTACTTGGAGGGAATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAGAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTTTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATTGACGAAGAATATTGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATGTTTCCAAATATAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATATTGATGGGGAGAAGCT # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 326701-328868 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000014.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_14chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 326701 30 100.0 38 .............................. GCAAACGTAAAGCAATGAATGGGAAAGGTTTTATCGTT 326769 30 100.0 37 .............................. ATGTCTGTACAGCTGTTGGTTGTTGCGGAACGTTATT 326836 30 100.0 36 .............................. ACGTTTTCTTGCCTTCATCATCATTGAGAACACTTT 326902 30 100.0 37 .............................. CCAGAAAAGGTGGTGAATCGATGAAACAAGGCAAACG 326969 30 100.0 35 .............................. TTGTATAGGTAAAATACTTCTTTTTCTTCAGTGTG 327034 30 100.0 39 .............................. ATTCGTTTTTATGAAAACAAAGGGTTTGAAAGATGGAAA 327103 30 100.0 37 .............................. GGCGTTCACCCCTTCGATTTTGATTCCGAGGAGGTCA 327170 30 100.0 36 .............................. AACGCCGTGTCGTTGCTAGCAACCGACGGCAAAACC 327236 30 100.0 37 .............................. CAGTTTTGGTTGATATCATCGATGGGGTCGAAAGTGT 327303 30 100.0 36 .............................. TCGGTTATGCCGCTGGATTCATGGTATTGAAATCCA 327369 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 327438 30 100.0 39 .............................. TAAAATTACACATGACTTGGCGAAGAAAATCGCGCAGGT 327507 30 100.0 37 .............................. TCAAACGGTCGATGATACCGAGCCGGAACCCTAACAT 327574 30 100.0 35 .............................. GGCGAATAAAATCTGACGAAAATTCGTTCGAGGGG 327639 30 100.0 38 .............................. TAATAAATATAATTCGTAGTCACACTAGTAACCTCAAA 327707 30 100.0 38 .............................. CACTACTGCATGCACGAACTCCGCTATTCACCATCACA 327775 30 100.0 37 .............................. CCAAAATCACTGGACAGTATTGGGTAGGCATACCGAG 327842 30 100.0 36 .............................. CAAGTCATGTGATATGACGTAAATGAACCGTCTGTT 327908 30 100.0 37 .............................. GGGAAGTTGCCACTAAAGATGTATCAAAAGACGGAAC 327975 30 100.0 37 .............................. ATTTCGGTCGAACGAGTGCATCCTCCAAGAATCACAC 328042 30 100.0 38 .............................. TGTTTATTTAAGAAAGATGAAAGGATTGGCATGTATCC 328110 30 100.0 38 .............................. TTTTATAAACAAGCTTTTGGTACGGATTTAGTTGGCGA 328178 30 100.0 37 .............................. AAGCCACGCTGGGCAAACGATGTGCCAAGCCGCAGAG 328245 30 100.0 37 .............................. ATACAATGTTAAAAGATTTATATGCATTAGGCATGAC 328312 30 100.0 36 .............................. TCTATTCTTCCGTGATAAAACAAGTAAACTATCTGA 328378 30 100.0 35 .............................. TTTTGATAGTCTGTTTTCACTTTTTCTAATTCCTC 328443 30 100.0 35 .............................. AAACGCAGATGGAGGCTTTATCGAAAGGCGTCAAC 328508 30 100.0 36 .............................. CAAGAAAATTTGAAGATTGGAAAAAAGGATACTTGC 328574 30 100.0 37 .............................. AGTCGTTCATGGTGTCATACGGAATGACAATATCATG 328641 30 100.0 35 .............................. AGATCAACCCTCGCGATAGTGATGCGGTCAATCTG 328706 30 100.0 36 .............................. ACGGAATGGAGGACGCAAAATCATGACGCAAACAAC 328772 30 100.0 37 .............................. ATGGCGGCAACGCACATTTGCAAGTAACAGAACTGTC 328839 30 93.3 0 .................G.A.......... | ========== ====== ====== ====== ============================== ======================================= ================== 33 30 99.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : ACAGTATTCTCTTGACATTGAAGCAGAAGAGATCCCATCTATTCAAACACTAGAAGACATTACACAATATCTTATAAAAATTAATGATTAAAATAAAAAATTTTAAATATAGAAAGAAGAATTCAAACGCCAACAGACAAAGAATAGCTAATCTTAAGTCAACTCGCGCGGCGACAGCTTATTGCCAGCATTCAGCCGCTTGTTATTTTAAAGACAGGCTTTAAGGGTATATAGGGACTGTGGTTGGTCTTTCCTTTTTCTTAATGAATACTTAGCGGTTAATCGAATCAACAATAGATGTTTGAATTCGTTGAATAGCAACGTATATTTTTGTCGTCGATCCCTAATAGCGCACAACCCCCAGGGGATCGACGACATGTTTATTTTCCTGCTTTTTTCTACAAATATCAGTATTTTTCCCATATTGACGCAATTTTCAAACTGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : CACAGAAACTGGAACTGACTATTCAAGATGTGTGCTCTTCCGACACTCTGTGTTTGCCGCTTAACTATGAGAAATAAGTCCTGTACAAAAAGCACATCAAAGGTTGCATGTACGCAACTACCATGATATTCAACCATGACAATTGCTTTTATTAGCGCATTACGGAACCGTTAGTGCGAAAGCCCCGAAATTGTGGGCTTTTTTAGTTTCGTTGTTAATTTTTGTTGATATATGCCGAGAAATTAGTTAAAATTTGGATAGGAAATTAGAAGTAGGAGAAAGGTGGTGGACCGCGGAAAATCGCGTTTCCGTTGTTGATAGTTTCCTAGAGTTTCTTCATCAGCAGCGGTGATGATATAATTGCGGAACGAAAATGTATCAGCATATCGTCATTACATGCGGAATTTCTTTGTTGACTGGAAAAGCGAACGTTTTTTCGATAAACCGTGATGAAACGATGGCGGAAATACGATCGTTACTAGATGTAAAAGAAATCAACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 338104-339395 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000014.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_14chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 338104 30 100.0 38 .............................. TCGTTCCTTGTATTCTCGCTACATTGAGTTAGGGGAAC 338172 30 100.0 36 .............................. GATATTGGAATTAATAATTTAGGAAAGTTAGTACGA 338238 30 100.0 36 .............................. CCGCATTTGAGTTGACGTTTGAATTGACTGACGTTG 338304 30 100.0 38 .............................. TACAATAAACTTCAGGTACATAAAAAAGGAGTGGGCAC 338372 30 100.0 37 .............................. CAGTAGCGTTCTCTTGTTAATTCGGTACATCCGATCT 338439 30 100.0 37 .............................. CGAAACACGCCGCCCAGCGAATTCACGAACGGTTTGG 338506 30 100.0 37 .............................. CTGAAATGCTTGCAATCCGGGCTGAACCAGCATAGTG 338573 30 100.0 37 .............................. ACCGTTAATGGTGGCACGGCTAACGTTACGGTTGCCG 338640 30 100.0 35 .............................. AAGAATCCATCGTCAACGCCTACGCATTAAAAACG 338705 30 100.0 36 .............................. TCCTATATTTTCACTCCAACCACAATAATCACATAC 338771 30 100.0 37 .............................. CGCGAAACGGAAGCTCACACGAAGCCAATTCAACAAG 338838 30 100.0 35 .............................. TTTTATGCGGACGGAACAGATTCTCCGACAATATG 338903 30 100.0 36 .............................. CTACGGAACAGCATGGCTTTTGTCAGAGGAATATGT 338969 30 100.0 36 .............................. TTTATTGGGGAAAACAGATGATCCTTCACCTTCCAA 339035 30 100.0 35 .............................. TATCAACCTCCATTTGATTTTTGAAGGCGATTCCT 339100 30 100.0 35 .............................. ATGATTTGGCCATCTGTTTGGAATCCTTTGGCCAA 339165 30 100.0 36 .............................. CTCGGCTGGGAAATCGACGCGAACGGGATGCTTGTT 339231 30 100.0 38 .............................. AACTTGGCATATGCATAAAATCCGATGAGTTTCCCACG 339299 30 100.0 37 .............................. TTAATTCTCTGATATATGCCTTCTCCTTTTCATCTAA 339366 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.8 36 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : CAAAAAAGAAAAAGAGCGGGAAGCAAAAAAGCTTTTAGAGGAACGTGAGAAAGAACAAGAACGCCAAAGATAAGAGGAAGAAGCGCGTCTGGCACAGCTTCCTCCAGAAGAACGGCTAGTGCGGCAAATCGAAATGCTTACCAATAGCCAGCAAGATCAAGAAAAAAGTAAATCTGTGCTGTATCAAGAGGTCATCGCGCAACAAAACAAACAGGCCGCACAAGCACTTAAAGCCTATTGGCAACGCATCGGACAATGGAACGTAAAACCAAGTAAGCAAAAACAATACGAAAAAGTACAAGCGATTCGGGCGTTGTTAGAAAGCTAACCCGTGTCGTCGACCTCCAATCGTGCAAAAATTGTGGAGGATCGACGACACTTCTTTTTCTCCTTCTTCCTTACAACCATCAATCATTACTATATATTGATCAAATTTTCTAAATGACGTATACTGATTTTAGCCATTTCAGAAAAACATTGATACATCAGCGTTTTTTAGG # Right flank : CTATCCAAGCATAGTGTTAGTCGAATAGTAACGTTAAATTTAAAGCTTGAGGACAGATGTTCCCCAAGCTTTTTTGTGCGATTATGATGTGTTTCATTATGTTAATCAGTGTCTCCCATAATATAGGGTTATGATTTTATAGTGTTCTTGTTGTTTCTTGTTGTTGGATTATCCCAGATATCAACGTCAATTCGTGCTTCTATAGTTTGCTGCAGTGTTTCCCCCCTTTGAGCCTGCCAAGACACCGTGTCCTCTTTTCTTTTGGCATAACTGCGAATTTCATCGATTGTCGCGGGTTCATAACTTCATCTTAATCGCTAATTTTTAATTAGTTATACTAGTGTAGTGTAAAGATCCAATCAAGACTTTTTTAGGTGTATTTTAGAGAAATTATTTGTAAAATAAAGATGAACGTCTCTTCCTAGCCATGCTTTTATTGCAGCCTTACGGACAACTGCTCAGGAGAAGATGGAAGAAGCGTTCTAACATTGGATAAAAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 413777-411721 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000015.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_15chrom, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 413776 29 100.0 35 ............................. TCAAAGAAAACGAAACCGCTTTGTGAATCCCTTCT 413712 29 100.0 37 ............................. TTCCGTTTTGATACCAACCAATTGTCAGGGTTCAATC 413646 29 100.0 35 ............................. GCGTTGATGTGTACGGAAATGAAGTAGTCGGCATT 413582 29 100.0 34 ............................. AAAGCAAAAGCTAGCTTGTAGAATGCTCTCTCGC 413519 29 100.0 37 ............................. TACTATGATCAATATCCAGCCATTCCGGAGCATCACA 413453 29 100.0 36 ............................. TGAAAATCTCGATAACGAATACCGATAGCATTTAAC 413388 29 100.0 40 ............................. CTAGATGATGAGGACGAAGAACTCGAATGGCTAAAAGAAA 413319 29 100.0 35 ............................. GGCGAACCTCGCCGGAAAAAAGAAGATAGGGAGGT 413255 29 100.0 36 ............................. CAACATGACCTGAAATAATGACTTTCGCGCTATACT 413190 29 100.0 35 ............................. AGCGAAGACAGAATTCCGAACGCGAACGCAAACGC 413126 29 100.0 37 ............................. AAGGAAGAACCGCACTTTTCGGAATGTACCCTACCGC 413060 29 100.0 35 ............................. AAAGATGTTGCCTTTTATTATGAAGAATGTTCCGA 412996 29 100.0 37 ............................. TTTTTGGAGGTAGGGTTATGCGCCGGCGTAAGGTCAT 412930 29 100.0 36 ............................. TATTCCAGCGCTCACGAGCCTTTTCCATCGCAGTTT 412865 29 100.0 34 ............................. TTAAGTTTATCAATGGTTTACACAATGCCATCTG 412802 29 100.0 39 ............................. AGTCGACCGCAAGGCGAAAGTGGGCGAGAAGATTATTGT 412734 29 100.0 37 ............................. ACGACCTTGCGGTCCTTAGCGATCCCGCGACGAAAAA 412668 29 100.0 34 ............................. AGTTTTCGCGACATCGTGAAGAACTTTGCCCAAA 412605 29 100.0 37 ............................. AGCGAAGCTGCGGAACGCTGGGGAATGAAACGAAATA 412539 29 100.0 35 ............................. AAGACGAATGGGACAAAGAAAACGGCGTCAGACGC 412475 29 100.0 35 ............................. ATGACTTCTAACTGTACTATTTAACTAGTACACCT 412411 29 100.0 36 ............................. AAACATTCCAGCATGTTCCGTTTACTATGATTCATC 412346 29 100.0 40 ............................. GAAAAAGTTGTTCTATATTGCTTTTCTACCTTTAGTGAAA 412277 29 100.0 37 ............................. TAACAATCATTAAAAAACAAGGCGGCCGCGTTGTTGA 412211 29 100.0 36 ............................. AAGACCAGCATTGAAAAGAAATATCGTTGGATTGAC 412146 29 100.0 36 ............................. ATGATGTCTTGCCGCTTGGTGAGATTGTCGCCGGTC 412081 29 100.0 39 ............................. GAGGATTCTGCTCCAAGTGTTGGTACTCGAAGTGCTACA 412013 29 100.0 35 ............................. TGAATATCTTTTGTTTCCACCCCTTTCAGTTATTC 411949 29 100.0 37 ............................. CCGCGACAAGCATGTTCAAATTCGTTGAGTAGATCGT 411883 29 100.0 37 ............................. GCGATCGATACGCTCACGTTCAGATTTGGCCAATTGC 411817 29 96.6 39 .............A............... CGACTACTAAAATAGCATTTTTCACCTCTTAATCTTTCA 411749 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ======================================== ================== 32 29 99.8 36 GTTTTATCTGAACGTAGTGGGATATAAAG # Left flank : TACAAACCGTTGAAAGCGTGGTGGTAGAATGTATGTCATTATCACATACGATGTGGGAGAAAAACGAGTAAATAAAGTATGTAAGAAACTTAAGGAATATTTAACATGGACGCAGAACAGCGTCTTTGAAGGAGAAATATCAAAAAGTTTATTAATGAAATGCATGCATGAACTTGAATTCATTATAAATAAACAAGAAGATTCGATTTATCTTTATCAAGTGTCCAACCCAAAAAATATAAAAAAGCAAATTTTGGGGCAGGAACGGAATTTTGATGATCTATTTATTTAACAGTGTAAAGCAGTTAACATGTTGCAGTAAACCTCGGTTTTATCTCAATATTGAAAAATGCTTGATATATCAAATAAAAACCACTTAATTTTTTAACTAAAGTAAAAACACAATTGCCGCTTTACTGCAAAAACCTATATATTGATGTAATCAAGGTTTGAAGAAAAACATTGATACATCAATATTTTGCCGTTGTTTGAAAATAGGG # Right flank : TTATCTTTCAGAACAACAAAAAAGAGCATTCCTGTTAGAAGTTTTGGGGGATTTGAATAAAAAAAGCACTCTTGGTATGATTCGGTGGTGTTATTGGAAAGTTGGGGCCTAATTGGGTACCAAGGTATGCATGAATTCTATCTCAAACAAGAAGATGAATCAAGTCACCGATCAAGCGGTAGTTGTTGTGCCATGGATATCAACGCAAAAAAATCATTTTGCATTTGTCAAGCGAGGATACTCATTTTCCGGCGTATCCGAAGAAAACAGATGAAACGTCAGCGTTCCAGTTTATCAACGTATAGCAAATGGAGAATCGAATGGCGCAAAGCTCGCCCTAACCGTACTTTAATCGTTATTTCGCACCGAATTGCATCACTTGATTGGTTAGAGCGCTACCTAGTGATAGAACATGGAAAAATTGTCGAGACAACTAGCTATGAGGAGATGATAAATAAAATCGAGAAGGCTGAACGGGCAGGGGAGAAAGGAGAGGAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGTAGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10542-11102 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000001.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_1chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10542 30 100.0 37 .............................. GCAAAAGGCTCGGCGAAACAGTTCAAGGCGGTCAACA 10609 30 100.0 36 .............................. TTATTTCAGTCATTGCTCAAGATTCAATATCTCCTA 10675 30 100.0 36 .............................. TAGCGCCATGCCAACTACGGCGGCGAACGGCGCAGA 10741 30 100.0 37 .............................. TTGGCTGTTTACGCACACATGGAACCGGAGGACCTAG 10808 30 100.0 35 .............................. AGCAAGGAAAGACCATTTGTTGCTACATCGAAAAT 10873 30 100.0 37 .............................. TATAACGTCTGCATTTCGTTAACATCGAGGAAATAAA 10940 30 100.0 36 .............................. CTCATTCCTTCTTCTTTCGGCCATTTGATTTGTTTG 11006 30 96.7 37 ....................A......... TCCGCGTCTTGTTCGATCTCTCCTGAATCCCGCAAGT 11073 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : CTAACAGGATATCTCGAACCCGCACAGCAATTTGAAGTGTCACATTTTTTTCCTGCAACCCATTTCCAATTGCTCCGGGATCTGCTCCGCCATGTCCTGGATCAATAAAGATTTTTACCATTTCTCCTCACCTCCATAAATAATTTATGTTTGTTCGCTGGACGTGCCTGTATAAAAAGCCTTGTGCATTTGAATCACCACCGTAAAAAAGAAAAAGCCACCTACCTAACAGGCAACTTATTTCCGTTCGTGGCATGCCCTCTCGCGATAAATATAGGAAAGGGGATTTTTGCACATTCTTTCCTAAAACATTGCATTCCTAAATATAATAAATGCCGTCGACCTCCGATCATGCAGAAAACCCAAGGGATCGACGACAGTTCTTATTCCCTTTTTCCTTAGGAATCTTCATCATTCCCATATATTGACACAATTTTCTTAATAGCGTATACTTTATGTAACATTTCAGAAAAATGCTGATACATCAATATTTTTTTTGG # Right flank : CCGATTCACCCGATCAACAAGAGTTTTAGAACCAAAATCATTTGTATCTCCCTATAAGGAATTAACCCTCTCTGTCCGCTGCCTGACTGGCCTTTGAAGTTTTTGAACGAAATTTGCTAGTGATAAAAAAAAATCGATAAAGCCGACAAGTTGTTTTATATTATGAAGGCAAAATGATAAACAAGGTTTCGCTCATGTTAGTTCACTTGTCTTATGGCTCTTGCCGGAATCAGCTGGCTGGGCAATTAGGAACCGGTGTTGCTGCGGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTCTGTTTGTCAGTCTGCGAAATCAGTATGAAGTCAAAGCCTGGTTAGGAGCTAGTGTTGGCTGGTTACTTACGATAGTAAGGAGGATATAGATGTATAAAAGTGGCTTTAAAACATTCTGGGCGGAAAAGTCACCATTTTTGCTCGAGGAACTTTTCAGCAACTCACTTTTCTAATTATCTTTTCCCCTCTTTTCACAAGCAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 18672-21036 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000001.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_1chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 18672 30 96.7 35 .G............................ CCGCAAGACGTTCCCGCGCGAGCTTCCGTATAACT 18737 30 96.7 38 .G............................ TTGTCTTTGACGATGACTAATTCGTCGATACATACGAG 18805 30 96.7 36 .G............................ TAGGTCGCATCTTTCTGTCTTTCTTTTCCTTTTTTC 18871 30 96.7 36 .G............................ CAGTTTTTCGCCGAAGATGGCGACGGTAACGACGGC 18937 30 96.7 36 .G............................ ATAATCTTTTTAACCGTTTGAAAAACGCCGCTTTTT 19003 30 96.7 36 .G............................ ATATGATGGCTAATCAAGATGTAGAGGTAATTCTTT 19069 30 96.7 37 .G............................ GTTTTAAAGAGAGCGAAAAGGGAAGTTAGAAGACTGA 19136 30 96.7 36 .G............................ TCTTTTTCAGTTTCAATCAAAAAACGATCATAACGG 19202 30 96.7 37 .G............................ TCCAAGCACGAATACATTTTCGTAATACGTTTTGAAA 19269 30 96.7 35 .G............................ CGAAAATTTGTTTGCTTTTGGCTGACGCAATTTTG 19334 30 96.7 38 .G............................ GCTATCCAAGCGAAAACAGTTCAAGAAGCATGGCAAAA 19402 30 96.7 36 .G............................ AACGTCACCATGTGATAATGGATTGCGCCGCGTTCC 19468 30 96.7 40 .G............................ CATTATATTTGTTAATAAAGTAATAACAAACTCTAGAAAT 19538 30 100.0 39 .............................. TTCATCCATTTCCCAACATCACGAGTGAGATACGAAACA 19607 30 100.0 35 .............................. ATGGGAAAATGCAAGACGTTGGCATTGGGTACTGG 19672 30 100.0 37 .............................. GAGAAAGAGGACGAAGAAACAGGCGAAACAGAAAAAG 19739 30 100.0 36 .............................. TAGATCGGGCGCGGAAAGGATACATTCAACCGCGAC 19805 30 100.0 37 .............................. ACCATTCATCTACTCGCTTCATATCATGAAAAAATTG 19872 30 100.0 36 .............................. TCGAGAAACCAAAAATGTTTTCACAACAAAAAATAG 19938 30 100.0 38 .............................. ATATATGGAACTCTTGTTTAAGCTGTTTGGCTTTGTGT 20006 30 100.0 36 .............................. TTTTCTATGACTTGATGCGGTTTACCGCACGTACGA A [20021] 20073 30 100.0 36 .............................. TCCGCCTACATTGCAAAATTGCGTCAGCCAAAAGCA 20139 30 96.7 36 ......................C....... ATATGTGTTTTTAGGTACTTTTGAGCCATTTCTTGT 20205 30 100.0 37 .............................. ACCGTCATCACGGCCGAGATCAACAGCTATAAAAACA 20272 30 100.0 36 .............................. AGTAAATCTAACAATTCAATATGTTCTTCGATTGTC 20338 30 100.0 37 .............................. AATTGACGGGAAAGAGACATTCCGTCAGGACGAGCTT 20405 30 100.0 38 .............................. TAAGTAATACATCATCAATTCCTTTTCCAAAAGATTCA 20473 30 100.0 36 .............................. GGATTCGGGTGAAAGATTATGATCGTCTTCCGGATT 20539 30 100.0 35 .............................. TTAAAAAAGACTGCATCCTTTTCCTGCATATATTT 20604 30 100.0 36 .............................. TAAATTCATGAGAATAAAACCGACTGACACACCCGA 20670 30 100.0 37 .............................. ATTTTTTTAGGTACACAAGTTGCCTTGGTACGCTATA 20737 30 100.0 37 .............................. CGAGTGAGTTTGACATTAGATTCTGCTGATTTTTCAA 20804 30 100.0 37 .............................. GGTGTATGAAATCTGACGAAAATTCGTTCGAGGGGAG 20871 30 100.0 36 .............................. TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 20937 29 90.0 40 .....C...............-...A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTTC 21006 30 76.7 0 ......GC...G.T...G.AA......... | C [21017] ========== ====== ====== ====== ============================== ======================================== ================== 36 30 97.8 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGATTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGTTTTAACAATTGCTCCAATTGAAATAGAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACAAAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTTCCTTTTGCTGCTTTTCCCAAGTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : CACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 346408-344446 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000001.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_1chrom, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 346407 30 100.0 39 .............................. TAAAAAATGGGATGGAACTACATGGCAAACAGTATCAAC 346338 30 100.0 36 .............................. ATACCGAACATGTCCTCGTGACGTTCTGCAAGATAC 346272 30 100.0 36 .............................. TTTCTTCGGCGATGGTGGCAGCTACACTGGATTTGC 346206 30 100.0 35 .............................. TTCCCTTCAAGCAAATGTAAACGAATCGGTTTTGC 346141 30 100.0 35 .............................. ATAGTTCGCCACCCGCCATCTTCTTCCTCAATTCC 346076 30 100.0 35 .............................. TACACACGCGCACTTTGAAGAACCTCACTCTCTGC 346011 30 100.0 37 .............................. CGTCGAGATTTTGGTCCGTTGTTGCATCCGAAACAGC 345944 30 100.0 38 .............................. CGCATCGCTCCTTTTCGTTAATTTATGATGCCGACCGG 345876 30 100.0 37 .............................. TCGCTCCTTTACGTGTCATTCGTTTTGTAAATCCGTT 345809 30 100.0 37 .............................. GAAAGAGCGGGGGCGAATGGCGCATGAGTAGAGTCGA 345742 30 100.0 37 .............................. GCGTAGTGAGAATCGAACGTAATTGCGTCGACTTACC 345675 30 100.0 39 .............................. CACAAGAACTAGCACAAGAATTAGAGCTTTATTTAGAAT 345606 30 100.0 35 .............................. TGTAATTTCTGACAAGGTTTTAGGCTGCCTCATCA 345541 30 100.0 36 .............................. TGAGAAAAAGACGCTTCCGAAAAAGGTGGAAGAAGA 345475 30 100.0 35 .............................. TTTTTCCAGTCGGAGACATGGCGACACATATGACG 345410 30 100.0 35 .............................. TTTCGATTGTCGGGAAAGTTTTATTAAGCAATTCG 345345 30 100.0 36 .............................. TCCGTTTATCGAGGGACTGAGTAAACGCCGCTTTTA 345279 30 100.0 37 .............................. TTGTCTGTATTTCTGACCAAGAATCGTTTCGTGATAG 345212 30 100.0 36 .............................. TGATTTTAAAGTAGGCAATGTAGTATTTCCAAGTGA 345146 30 100.0 37 .............................. TTGATTTTCACTGTATCGCCATATGCTTTGATTTCGC 345079 30 96.7 37 ....A......................... TACTCAAGAAGGAATAAAACAAGTTTGTAACGCTTCA 345012 30 96.7 39 ....A......................... GATGTTCTGTCATTGATTTAGATTGGCACAAAGAAGTAG 344943 30 96.7 35 ....A......................... ATTTGTATGGTGAAGAACTTGCGATGCGGTGGGAA 344878 30 100.0 36 .............................. GACTTGCAAATGCAATTGCAAACATGAGCGCTTCAA 344812 30 100.0 38 .............................. AAGCGGTTGCTACATTCCTAATTCCATCAAGAACGTCA 344744 30 100.0 38 .............................. CTGGAGATTCAGACCATAAGAAAGTAATTGATTTCACT 344676 30 96.7 37 A............................. ATTCCTATTGGGATTATTTGTATATCGCCTATATTAT 344609 30 96.7 37 .............................T GACAGTTAGCTGTGAAAATGTCTAAAGAAATCATCAA 344542 30 100.0 37 .............................. TCACACAATATTCTTTTCCTAATGTATCAACACCTTC 344475 30 93.3 0 ....................A.G....... | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.2 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TCGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCGGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCCTTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCCTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : AAACTTTGTCTATCCGCTTTTTTCTGCCACTTTTAATGGGTTTAAAAAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCAAAACAATGTTAACAGGGGATAAGAGAGTCCCCATGATTCAACACGATCCGGAAAATTCCGCTAAGAGGCTGCGGTTTGCATTTTTTATTCTCCGGTAATCTTAACATCGCTGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGACTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCCGGTTTGTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 51998-51094 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000020.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_plasmid1prt1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 51997 30 100.0 37 .............................. AAAATATGGAAGGTATATTTGATGAATGGGATCTAGC 51930 30 100.0 38 .............................. GGCTAATCGCCTGCAATCCGCTTCGCTCTCTACTACGT 51862 30 100.0 35 .............................. TTTATGCGTCCGAGTTACTAGCAATCGAAGAAGAA 51797 30 100.0 36 .............................. TAACCTTCGAGAATCTTTTTCGCCTTTTCTAACGGC 51731 30 100.0 38 .............................. ACAAACCGATCATGAAATCCGGGTCTTGGATGGAACGT 51663 30 100.0 40 .............................. CCTCCTTTCATAAAATCCAGCCAGCGCCGGGAAGCGACTG 51593 30 100.0 36 .............................. TTTTTTGTCTGACGGTATATATTTTTGCTTCGCTCT 51527 30 100.0 39 .............................. CGGGACAAGGAGAAAAACAGGGAGGATGTCTTGCGTAGG 51458 30 100.0 37 .............................. ACTGATGAAAGTTTAGAAATAATTAACTCTTATTTTA 51391 30 100.0 38 .............................. AGAGGGAAATAGCCTTTTGCGCCTTTTGAGTCCTCCGG 51323 30 100.0 38 .............................. CGCTAACACATTCGCCATCATGGCTGCAATCTTCGCAA 51255 30 100.0 35 .............................. GATATAGATGGTGGTAATTAATCCAATCTGAAAGG 51190 30 100.0 38 .............................. TTCCCTTGATCATTTTGAACAACGATCGCAGGACGTTT 51122 29 76.7 0 ....T....G......C..A...C.-...G | ========== ====== ====== ====== ============================== ======================================== ================== 14 30 98.3 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : GAACGGTTTTCTTCTTTTTTTGCCCAAAAAAGTGCCCCAAAAGCGAACGCTATGCGAACACTTTTGGGACATCCTCAAGTGTTTTAATATTTCTCATATATGGATCGTTAAAAATAAAAAATAGGCGCTTTGCTAAAAAATGACCGCTCAAATTCGCCTGTAACGCGTTTTAATCGATAAGGCAATGGTTTTAATAGAAAAACGCCTGTACGGGACGTTTTTTCACGTTTAACGCGGTTTTCATATTTTTCACCTCACAACAATGTAAAAAAACAACTATCAAATGCTTCACATGTTCCAATCCTTTCTGTCGTCGACCCCCAATCGTGCAAAAATCCCAGGGGATCGACGACAGTTTCTTTTTCTCTTTCCTTCCTACAGCCATCAACGTTCCGCTCTATTGACGGAATTTTCGAAATGGAGTATACTGAACTTGCCCTGTTTTGAAAATTGTTGATGTATCAACGATTTTTAG # Right flank : ATAAGACTAATGCGAAAACCCGCTGATTTTTCAGCGGGTTTTGTCATCTGCTCAACACCTGATCGTCAGGAGTTTTTTCATTTTAATTAGGCTTTTTCTCTCCTCCTGCAGCGATGCGATGAGCGGCTTCCTGGAGTCGCTTCGCATGGCTGCGGAATGAGTCCGCTTGCACAACGGCTTCTTTGAACGTACCGAGCGCCGGGCTTCGGAGGCTCCAGCCGGATTGCCATAGGCAAGGAGGCGGACAGCCGAGAAGACCGGCGCGGGCTTTATTATATGATTGGAAGAAAAATATAAACCTTGTTAGGAAGAAAAGAAGGAATAAACGTTGGCTCTTTTATTTGTTGATTTATTGATTAATTTATTCAATGCCACAAGGTTTTATTGTTTTATTGGATGCTTTATTCGTTGCTTGAAAGCTTCCTGCAGCGATGCAATGAGCAGCTGCCTGAAGTTGCTCCGCATGGCTGCGGAATGAATCGGCTTGCACAGCGGCTTCT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 138274-142124 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQOL01000004.1 Parageobacillus thermoglucosidasius strain DSM 21625 DSM21625_4chrom, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================= ================== 138274 30 100.0 37 .............................. CGAAAAGAACACGTCGCGGACGGCGGGAGGTGACGCG 138341 30 100.0 35 .............................. TATCGTTTGGCAAAGTTATACAACGTTGATATTTC 138406 30 100.0 36 .............................. GTTGTTCAATCTCCTGATATTTTTGCTCGAGTTCCG 138472 30 100.0 35 .............................. GCCGTGCCTTGCCGACGCTGGCGCCCACGAAAAGG 138537 30 100.0 38 .............................. ACGACTACCTCTATATCTCTTTGAGCGTCAAAAGGTAA 138605 30 100.0 37 .............................. CGCAGCTCGCGCTCCACAAGCCGGCGGACTTTATCGG 138672 30 100.0 39 .............................. GCCACCGCTGATTTTTCGGGTTGCGTTCCTGCACTTTCG 138741 30 100.0 37 .............................. AACGCGAACGGGTACGAAGTAACCGAAACGAATGTCG 138808 30 100.0 37 .............................. TTCATTTCAAATTTTGTATTGACGTACGTAATCTTCC 138875 30 100.0 36 .............................. CTTTAATCGGTTCATATGTTATTTTATTATTTTTTG 138941 30 100.0 34 .............................. AGCATTAGCTCTAATTTCTAAAACCCCACTTGAT 139005 30 100.0 36 .............................. GACGTTCAATGCTTAAAAGGTGTTGTGTTTTGCTCC 139071 30 100.0 35 .............................. TAAAGCCATTGACCAATAATAAACGCACAGAGCCC 139136 30 100.0 35 .............................. TTTTTTCCTGCTTTCTCCGCGTGAAATCCTTCAAC 139201 30 100.0 36 .............................. CGAAAATACGATCGTACCCCGATATGTTTACATATC 139267 30 100.0 35 .............................. ACCGTTTGAAAAACACCGTTTTTTTGCTCACTAAA 139332 30 100.0 36 .............................. TTTGCTTTCTTGTCCTGAGTAAGACGTTAAACTGCT 139398 30 100.0 37 .............................. ATAAAGAACATCGCAACGTTTTAGCTGACATCGAAAA 139465 30 100.0 37 .............................. ACGGAGGTGAACGAGATGTGGCTGAAAAACAAGAAAA 139532 30 100.0 38 .............................. TGGTCATTGTCTCACCTCAAGATTGGCAAAAGTCTGCG 139600 30 100.0 35 .............................. TCGAAAAATATGCGTCGTAAGGGATTGGATTTTCA 139665 30 100.0 39 .............................. AAATCCCGCATAAGTGTATAGATCTTCGTTTGAATGTCT 139734 30 100.0 36 .............................. TAAAAAGAACGTGCCGCAAAAAGCAACACGTTTCCA 139800 30 100.0 36 .............................. ACTTGATTAATAGCGATTAATAAGCAGAAAATTAGG 139866 30 100.0 38 .............................. ACTCCTTTTGTCGTACATCGTCAAGAATATTTTTCCTG 139934 30 100.0 38 .............................. CTGGCTCAAGTATTTTTTCCTGCAATGCCGCATTCTTT 140002 30 100.0 41 .............................. TAGACAGAAAGAACAAATAAAAACTAAACAAAAGCCAACAA 140073 30 100.0 38 .............................. ATGTATGTGGAACCGTAAGACCAGAGGTCCACCTTTTC 140141 30 100.0 38 .............................. ACCTCCTATTTGCCTAACTTTTTGAGGCAACCGTATCT 140209 30 100.0 36 .............................. TCGTTCCTTGTATTCTCGCTACATTGAGTTAGGGGA 140275 30 100.0 38 .............................. TTTAGATTGGGAAACATTTTGCAGAGAGTATCATTTTG 140343 30 100.0 38 .............................. CATATTCGATACATTAGAAAGCTATCTACAATTTGAAA 140411 30 100.0 38 .............................. CACTGTTGATTAACTTATAAACATCATTCCATGTCAAT 140479 30 100.0 36 .............................. GAATTTGATTTCTACGCAAATGATGGAAATGTAATC 140545 30 100.0 36 .............................. AAAGTCACGACATGGTAATGTATCGCCCCACGCTTT 140611 30 100.0 36 .............................. TGCGTCGACTCCTTCACTTCGTTTCGGCCGCGCAAG 140677 30 100.0 35 .............................. ACGGTAATCCTGGAACGTTCTCCGATAGCATAAAT 140742 30 100.0 36 .............................. AGCCTCTGAAATTGAGATTGATTGTGATGTATTTAA 140808 30 100.0 36 .............................. AAGGGTATGACGGGGGATATTTACATCATAGAAATG 140874 30 100.0 35 .............................. ACATCTGATGAATGGGAGAATAAAGCTAAAGACCG 140939 30 100.0 39 .............................. TGTTCTTTATCTAATTTCAAACACAGATTCCACACTTCA 141008 30 100.0 35 .............................. TCAGCCGCCCCGTATCCATATGCTCGTACCATCGG 141073 30 100.0 36 .............................. TGAAATAACCGATAATACTTTAACAAGAAATTTAGA 141139 30 100.0 35 .............................. TGAAAGAAAATATTCAATGATAGCGGGGGTAAGGC 141204 30 100.0 35 .............................. CGGAGATTCAACGATTGGATTCCGAGGAAAATTAA 141269 30 100.0 37 .............................. CTATGATCGTTTTTCACACTATGAATATACTGATATC 141336 30 100.0 37 .............................. ACTTAGGGAAAAGCGAAGAGGTAGCTGGGACCGCCAT 141403 30 100.0 35 .............................. GGCATTATGCTTCATCTCCTTTCGAGCGTTTCTGC 141468 30 100.0 38 .............................. CATAATGACGAAGGAGCACATTCGGCTGCTTCGTGAAG 141536 30 96.7 36 ..................G........... ACTTCTAAAACATCCTTTCTCCTTCTACCCATATTC 141602 30 100.0 35 .............................. ATGAGTGGTTAGATGAGTATAGTGCGAGGACAGGG 141667 30 100.0 38 .............................. TCTCTCACCCGATCAATAAGCGTTTTAGCTCCGAAATC 141735 30 100.0 35 .............................. CAGTAGAAGAAACGGCATCAATGTAACCTCCTGAC 141800 30 100.0 37 .............................. TCGAGATTGATAAAGAGAACCTTCCGGAACGCTTCGA 141867 30 100.0 36 .............................. TCCGTTTCTAGCTTCTCTGATTTCTGTCTCAACTCC 141933 30 96.7 38 ....G......................... CGGAAATCTGGAACAAGTGCATCTGACATTTTTTCAGG 142001 30 96.7 65 ....G......................... GTGGTCTGCGACTTGACAGCTTTCGTGTCGCGTGCATGTTTATATCTTATGGACCGATTTTGCCT 142096 29 76.7 0 ............G...C..A.-....TCC. | ========== ====== ====== ====== ============================== ================================================================= ================== 58 30 99.4 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTGAATAGCGGCCATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTTTTGGG # Right flank : CCTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTATTGACACAGCTGAGATGTACGGAAATGGCGCTTCTGAACGCTTAGTCGGCGAAGCCATCAAAGGGCGCAGGGATGATGTGTTTTTAGTCTCTAAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //