Array 1 1759263-1760940 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMA01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL01781 2014LSAL01781_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1759263 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1759324 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1759385 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1759446 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1759507 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1759568 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1759629 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1759690 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1759751 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1759812 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1759873 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1759934 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1759995 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1760057 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1760118 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1760179 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1760240 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1760301 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1760363 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1760424 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1760485 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1760547 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1760608 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1760669 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1760730 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1760791 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1760852 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1760913 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1777199-1779180 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCMA01000003.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL01781 2014LSAL01781_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1777199 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1777260 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1777321 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1777382 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1777443 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1777504 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1777565 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1777626 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1777687 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1777748 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1777809 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1777870 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1777931 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1777992 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1778053 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1778114 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1778175 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1778236 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1778297 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1778358 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1778419 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1778480 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1778541 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1778602 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1778663 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1778724 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1778785 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1778846 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1778907 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1778968 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1779029 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1779090 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1779151 29 96.6 0 A............................ | A [1779177] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //