Array 1 145550-146981 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHF01000004.1 Salmonella enterica strain BCW_5891 NODE_4_length_325532_cov_4.48481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 145550 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 145611 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 145672 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 145733 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 145794 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 145855 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 145916 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 145977 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 146038 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 146099 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 146160 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 146221 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 146282 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 146343 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 146404 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 146465 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 146527 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 146588 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 146649 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 146710 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 146771 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 146832 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 146893 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 146954 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163113-165138 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHF01000004.1 Salmonella enterica strain BCW_5891 NODE_4_length_325532_cov_4.48481, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163113 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163174 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163235 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163296 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163357 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 163418 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 163479 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163541 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163602 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163663 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163724 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163785 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163846 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163907 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163968 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 164029 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 164090 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 164151 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 164212 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 164273 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 164334 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 164395 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 164457 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 164560 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 164621 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 164682 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 164743 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 164804 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 164865 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164926 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164987 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165048 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165109 29 96.6 0 A............................ | A [165135] ========== ====== ====== ====== ============================= ========================================================================== ================== 33 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //