Array 1 5231-6661 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXW01000009.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU13-1-54-3 NODE_9_length_90692_cov_15.0123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5231 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 5292 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 5353 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 5414 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5475 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5536 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5597 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5658 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5719 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5780 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5841 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5902 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5963 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 6024 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 6085 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 6146 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6207 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6268 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6329 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6390 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6451 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6512 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6573 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6634 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23424-25405 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXW01000009.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU13-1-54-3 NODE_9_length_90692_cov_15.0123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23424 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23485 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23546 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23607 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23668 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23729 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 23790 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 23851 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 23912 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 23973 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24034 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24095 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24156 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24217 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24278 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24339 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24400 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24461 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 24522 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24583 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 24644 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 24705 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 24766 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 24827 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 24888 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 24949 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 25010 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 25071 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25132 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25193 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25254 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25315 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25376 29 96.6 0 ............T................ | A [25403] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //