Array 1 97913-96955 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAIDL010000005.1 Streptococcus pyogenes strain 44031V1S1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     97912	    32	 100.0	    35	................................	AATCAATCAGCGCTTTTTGTCGATTACAGCGGTAA 	
     97845	    32	 100.0	    35	................................	TGACATCTATAATCCCTAGCTTTCCTTTGATACGA 	
     97778	    32	 100.0	    35	................................	CAGATATTAAACCATTCTTACCACCACCACGTCCC 	
     97711	    32	 100.0	    33	................................	TGTATCAACGCAGCCGACAAATACACATTTTAA   	
     97646	    32	 100.0	    34	................................	AATCTCATAAACAGGGGTATTTGATTTGAGGGTC  	
     97580	    32	 100.0	    34	................................	GATATGATACAGACGTCTGTCCTTGTCATTCAAT  	
     97514	    32	 100.0	    34	................................	AAGACGTGTATAAATTACACACAATCAATACTAA  	
     97448	    32	 100.0	    34	................................	AAGTCATCACGTAAATTTTGCAACGCTTCATCTG  	
     97382	    32	 100.0	    33	................................	CATCTAAAGCATCTGATCGGTTTTTAAGCTCAT   	
     97317	    32	 100.0	    33	................................	TGTATAAATTGCGAAAAGAAAAAGGAATTTCAC   	
     97252	    32	 100.0	    34	................................	ATTTAGTCGCCAACTTTAACTATGATCAAACTTG  	
     97186	    32	 100.0	    36	................................	TCTGAAGTTAAGACCTTGTCCAGAAGCCAAACCAAG	
     97118	    32	 100.0	    33	................................	GTCGATAATGGCTTGATGATCACCTGAGAAAGT   	
     97053	    32	 100.0	    35	................................	TCCATTTTTTACTTTCTCATGTGGCAAAACATAAT 	
     96986	    32	  96.9	     0	...............................G	|                                   	
==========	======	======	======	================================	====================================	==================
        15	    32	  99.8	    34	GTCTCACCCTTCATGGGTGAGTGGATTGAAAT	                                    	       

# Left flank :   AAGGCTATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACTTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA
# Right flank :  ATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTACA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCACCCTTCATGGGTGAGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.12%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.70,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : NA
//