Array 1 1604-722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPYS010000010.1 Phocaeicola vulgatus strain MSK.6.33 NODE_10_length_120753_cov_209.159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1603 33 97.0 31 ................................A TAAGAACCTAATATTTGAAACAAATGTTTAC 1539 33 100.0 33 ................................. TATGGATACAATAATCACATTGACCACAATCCA 1473 33 97.0 33 ................................A CATTATATTGGAGGCTGGTCTAGTGTAATTAAT 1407 33 100.0 32 ................................. GCGAAGAGGCACCAATAGCATTGCCAGCAAGT 1342 33 100.0 32 ................................. GAATTATGTTGATGTTCAGAACTATATTAAAC 1277 33 100.0 32 ................................. GAAGGTTGAGAGCGGGAACAGCCTGCATACCA 1212 33 97.0 33 ................................C TTGCTTACCAGAAGATCTACTATGATTTCTATA 1146 33 100.0 33 ................................. TGTCTATAAACGCACAACTCACACTCCATCACA 1080 33 100.0 32 ................................. TATGAAACGTTACATTTCTACGCTGTGGGTGA 1015 33 97.0 31 ................................C TTCTTGGGAAGCAGCGCGAGCAGCACGTCCT 951 33 97.0 31 ................................A TATTCTGAACACATTGCAAATGTACAAAAAG 887 33 100.0 32 ................................. GGGAAGCTTGCGCCGGATACATTATGGACGTT 822 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 756 33 90.9 0 ....................A.........G.A | TA [733] ========== ====== ====== ====== ================================= ================================= ================== 14 33 98.1 32 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //