Array 1 36794-34829 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETY01000009.1 Salmonella enterica isolate STY125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 36793 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 36732 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 36671 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 36610 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 36549 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 36488 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 36427 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 36365 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 36304 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 36243 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 36182 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 36121 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 36060 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 35999 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 35938 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 35877 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 35816 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 35755 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 35694 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 35633 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 35572 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 35510 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 35407 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 35346 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 35285 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 35224 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 35163 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 35102 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 35041 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 34980 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 34919 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 34858 29 96.6 0 A............................ | A [34831] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 54418-52925 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETY01000009.1 Salmonella enterica isolate STY125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54417 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 54356 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 54295 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 54234 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 54173 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 54112 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 54051 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 53990 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 53929 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 53868 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 53807 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 53746 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 53685 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 53624 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 53563 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 53502 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 53440 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 53379 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 53318 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 53257 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 53196 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 53135 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 53074 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 53013 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 52952 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //