Array 1 11816-12149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000031.1 Streptomyces sp. REN17 scaffold31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11816 29 72.4 32 ACCA.......GGG..............T TCCGCGTGACGCGATGCCGCCGAATTGCCTGC 11877 29 100.0 32 ............................. AACGGGGCCCTGCTCTACCTGGATCCCGACAG 11938 29 100.0 32 ............................. GGTGGCGGCCGGAAGACGAAGACGAAGCCGCG 11999 29 100.0 32 ............................. GGGCCCGGGTCGACATCCAGGCCGAGGGCGAG 12060 29 100.0 32 ............................. ACCACACCCGCACCCTCACCTGGCACGCCTAC 12121 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CGTCCTACGGGGCGATGGGGCCGTTCTTCCTGTCCGGGTGAGCGGCCAGGACATAGCGGGTGGCGGAGAGGTTGGACGGGCCGAAGAGTTCCATCAACCGGCCGGGGTCGGCGCTGTGGTGTGCTTCGTCGTAGATTCGGTCTACGCGCAAGACGCCGGCGGGCAGGCCGAGTTGTTTGAAGGGCTTTTGGACCGTGCCGGCGCTGATGGGCGGGCCGGCGTCGTTGACGGCGTTGTTGCGGGTGACGGCCTGCACCCCCAGCGTCTTCACCAGGGCAACGACCGCCGGGGAGACCATGCCCTCCATCTGCTCACCAGCTCGCCGACGGGCGCAGATCAGTAGTCACCGCGCTGTCCCGCTCGGCCGGCCTGGTTGATGGCCTTCGCGGAACCGCGTCGATGCGGTAGTGCAAGACATCCCTGGCACCTTCGGTGCCGCCGAGCTCTTCTGGCGCAGGCGATAGGCCCGGCAGCAGCACGACCGGCGGGGCGGATTCGGG # Right flank : CGTGCCCGTCGGCGCGTCCGTAGCGGGCACGATCTGCTCCCCGCCGGCCAGGCGCTGCACCGACAGCTCGCCGTACCGGCCGATGTGGTCAAACACCAGCTCCTGGTCGTCGATGTCGGCGGGCTCCGGCTCCGCAGCGGGGACAACGCTGGCCGGACATGGCGCGGACAGTCCGAGCGCAGGTCCAGCTGCTCGGTCTGCGGGTGAGTAGTCCAACGCAGAGAGTCTGTTGGCTGCATTGGACGACTTGGTCGGATGGATACGGCCCGGTGAGCGCTGTGCGCTTCACAGTGCAGATGGCTCGGGACACGGGAGACGACCGCCGCTCCGCCTTCACGCGTACATCATGGAATCGACACGTTCTCTGCTGGTTCGGTAGGCTCCGGGCGCTTCATCCGCACCACAGAGGGGGGATTCCTCGTGCGTATGCGTCTTGTCCTGACCGCAGTTGCCGCCGTCGGCGCCCTTGCCGCCGTCACCAGCCCGGTCCAAGCGGCCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65011-64132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000027.1 Streptomyces sp. REN17 scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65010 29 100.0 32 ............................. TGGCCGGCGGTCAGGGCGTGGTCCGTGTGGAA 64949 29 100.0 32 ............................. GCGGGCGGTGCCAGCATCACGACGCCGCCGCC 64888 29 100.0 32 ............................. CGGCACGTCGTCACCCCCGGCGACACGGACGA 64827 29 100.0 32 ............................. ATGTGGCGTTCTACTTCGTCTTCCACTCCTAG 64766 29 100.0 32 ............................. ACCCGGGTGGTGTGGCGATGCACTGGCATCGC 64705 29 100.0 32 ............................. GTCCGGACATGTAAAAGGCCCTGACCCGAACC 64644 29 100.0 32 ............................. TCGGGTGAGGTCATCGAGACGACCGTCTCCGA 64583 29 100.0 32 ............................. CGGCAGACGCTCGCCGCGATCGAGAAAGCGTG 64522 29 96.6 32 ......T...................... CGGGTCTGACCTGCGAGGTTGCCGGTTGACCC 64461 29 100.0 32 ............................. GCGGCGCAGGACTGGGCGCTGGGTCACACCGG 64400 29 96.6 32 ......T...................... CGTGCCCGACGGAGACGAGGGCCACGGTGTGA 64339 29 100.0 32 ............................. GCCCCAGCTTGCTTTGTCCAGCACCAGGACGG 64278 29 96.6 32 ...........................T. CCCAAGCGGGATCTGTCCGGGCCCGGCGCGAT 64217 29 96.6 28 .........................C... GCGGCCACGACGCCGGCGGCTGGGTGGT 64160 29 89.7 0 .....T...............T...C... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGTGCTCCCCGCACCCGCGGGGATGGTCCCCGCCCCAGGCGTGTCGCCACCCTGTCCCAGGTGTGCTCCCCGCACCCGCGGGGATGGTCCCGCCCGGCGGCGGACGAACCGGTGGGGCATCACGTGCTCCCCGCACCCGCGGGGATGGTCCCCGCCCCAGGCGTGTCGCCACCCTGTCCCAGGTGTGCTCCCCGCACCCGCGGGGATGGTCCCGCCCGGCGGCGGACGAACCGGTGGGGCATCACGTGCTCCCCGCACCCGCGGGGATGGTCCCCGCAACGCCGCGGTGGCCGTGTACGTCTTGGTGTGCTCCCCGCACCCGCGGGGATGGTCCCGATGTTGACCTGCGGGGACTGGCGGCTGCCCGGTGCTCCCCGCACCCGCGGGGATGGTCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : AACCTGTGGATAGGGCGGGAGGCGGAGCCCGGATCACTCGTCGGCAACTGGCTGTCTGGTGTGCAGGCAGCTACCGGACAACAGCCTCAGCACGCCTCGCGGGAGTCTCCGCCAGGTCTGAGGAGCCACCCATCAAACTGATCCGCACCATGACGGACCATGAGCCCTGGCTGCCCGACCATTTCTAGGGTTCCGCGGCATCCTGTAATTTGCCCTGCGCCTGGCGGTCTCATTTGATGATCTGCGGGAGTCGACCGGTCGCCTGCGGACGACGCCTCACGAACGTGAGATCATCGGATACAAATGAGGTCAGGTTCGGTGGCGGATTGGCTGCACAAGAAGGTCTCTTCGATACGAGTCGGCCGCGCCAAATGAAAGTACCTGGCTATGTACATGGCGAGCGGCAACGCTTGTACGCGAGTTTCGACACCGTCTGGCTCCTTCACCGGCCGCGAGTGTCGGTGAGTTCGAGCAACACCTCAGAGGACTGGGGAGCCACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66485-65114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000027.1 Streptomyces sp. REN17 scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66484 29 100.0 32 ............................. CGCTCCAGGGACTCGGGCAGGAGGACGGTGTC 66423 29 100.0 32 ............................. CACTCCCGGAACTGACCAAGGACACCGGAGCC 66362 29 100.0 32 ............................. GCGGGCCCGCTCAGCCTCGGACTTGTTGGACG 66301 29 100.0 32 ............................. AGCAGATCCAGGCCCGCGAGGAAGCCGCCCGG 66240 29 100.0 32 ............................. ATCAATGGGCACTGCGGGAACTTGGGTAGCTA 66179 29 100.0 32 ............................. AAGGGCTCAAGAGGGCTTCACTCGCTACTTCG 66118 29 100.0 32 ............................. CGCTCGGGCGGGCTCTCATCGCCAAGACGAGC 66057 29 96.6 32 ................T............ ATCGTCATGCAGCCGGCCAGGACACAGATCAC 65996 29 100.0 32 ............................. CGGGCCTGCGAGTTCACCCCCAGCGAGCCGGG 65935 29 100.0 32 ............................. CACGGGGAGAACGAGACCGACCTCGAATCGGC 65874 29 96.6 32 ..A.......................... GATCTGGTGTCCGAGCGGGCTCCGATGGTGAA 65813 29 100.0 32 ............................. ACCATCCTGTGGAGCCAGAACTACGGCACGCC 65752 29 100.0 32 ............................. ACCGACATCTCCGGCTGGAAGAACCGGAAGTC 65691 29 100.0 32 ............................. GTGTCGAAGACTGCGCCGGAGGCCAGGCACCA 65630 29 100.0 32 ............................. TGGTCACCACGGCGGGGCGTCTCACTCTCGAC 65569 29 100.0 32 ............................. TCCGTGCCGTACACCGACCGGAAGTCGGTGGC 65508 29 100.0 32 ............................. CGCCCCAGGCGTGTCGCCACCCTGTCCCAGGT 65447 29 100.0 32 ............................. GCCCGGCGGCGGACGAACCGGTGGGGCATCAC 65386 29 100.0 32 ............................. CGCCCCAGGCGTGTCGCCACCCTGTCCCAGGT 65325 29 100.0 32 ............................. GCCCGGCGGCGGACGAACCGGTGGGGCATCAC 65264 29 100.0 32 ............................. CGCAACGCCGCGGTGGCCGTGTACGTCTTGGT 65203 29 100.0 32 ............................. GATGTTGACCTGCGGGGACTGGCGGCTGCCCG 65142 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCAACTTCCAGGATCAGGACGAGTTCGGCGGGCACCTGGGATACGGCGATACGGAGACGACCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGCCTACGGGGATTCCTCACCCGCTGGCTGCTCGAAATCTCCGCTGGCGTCTTCATCGGCAACCCGTCCGCCCGCATCCGCGACCTGCTGTGGGACGAGGTCCAGCAGTACGCCAACCAGGGTCGGGCCCTCCTGGCCCACACGGCCAACAACGAACAGGGCTTCATCTTCCAAACTCACGACCACGCCTGGCACCCGGTCGACCACGAGGGACTGACCCTGATCCGCCGCCCGAACGCCCAAAGCACGCCCAGCTCGGCCGCGCCGAAAAAAGGCTGGAGCAAAGCGTCCAAACGACGTCGATACGGAAGTTAGGGAAGCGTAGAAATGGGCGTTATGTCGGATTCTGTGAAACTACTAAAAATGGGCCTCTTGCCGTAACGAAGCTGCAGGTCACCAAGT # Right flank : TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGCTCCCCGCACCCGCGGGGATGGTCCCTGGCCGGCGGTCAGGGCGTGGTCCGTGTGGAAGTGCTCCCCGCACCCGCGGGGATGGTCCCGCGGGCGGTGCCAGCATCACGACGCCGCCGCCGTGCTCCCCGCACCCGCGGGGATGGTCCCCGGCACGTCGTCACCCCCGGCGACACGGACGAGTGCTCCCCGCACCCGCGGGGATGGTCCCATGTGGCGTTCTACTTCGTCTTCCACTCCTAGGTGCTCCCCGCACCCGCGGGGATGGTCCCACCCGGGTGGTGTGGCGATGCACTGGCATCGCGTGCTCCCCGCACCCGCGGGGATGGTCCCGTCCGGACATGTAAAAGGCCCTGACCCGAACCGTGCTCCCCGCACCCGCGGGGATGGTCCCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 76159-76918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000027.1 Streptomyces sp. REN17 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76159 29 96.6 32 ............................G CAGTCGCGTACGACTGACCCGCCCGCCGCCTA 76220 29 100.0 32 ............................. TCCGGAGAATCCCCAACCGTAGGCGCGGGCCA 76281 29 100.0 32 ............................. CGTGCGGAGGTGTTGGTGGACAGCGCGAGGCC 76342 29 100.0 32 ............................. AGCAACGAGGACTGACCGGAGCCCGCCATGAA 76403 29 100.0 32 ............................. TCCGCGCTGATGACCTTGCAGCCCAGAAACGT 76464 29 96.6 31 ............................T GGGCACCGAAGTGCCCGGCACCCTGCTGCGC 76524 29 100.0 32 ............................. TCGGCCTCGTCGTAGACGTAGCCGCAGGCGGT 76585 29 100.0 32 ............................. TACACGCCGCTCATCGTGCGCCGTGACCCGGC 76646 29 100.0 32 ............................. GTTCCTGGAGGCCGTGGAGCTGTTCCTCGGTC 76707 29 93.1 32 ......T.......T.............. GGGGTGCTGCACCTGCCCAACCGTGAGCCGGT 76768 29 100.0 32 ............................. GCACCCCGGACCGGCCCACACCGACCGGTGGT 76829 29 96.6 32 .................A........... TAGCTGACGCTAGTTCGATAGTGGCCGGGAAA 76890 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GACGTCGTGCACCCCTGCCAGCCACACCACCAGCCGACGCGCATCCGCCTGGTCCCCGGGCAGTACGTCGGCGATCAGCCTGCGCACAGCGTGGGGCAGCCACTCGTCCCACAACCGCCCGGCCACCGCGGCGCTGTCCTCCATGTGCCGCCACAACGGCAGCCATCCGTCCGAGTCCCGGTCGTGCTTGGCCCACACACTCAGCACCGGTCCGCTGAGCCTCGCGCGCAACCCGGCAGATCCCTCTCCCCTGTACGTCACATCAGATCAATACATGCAAAAAGCAGCTCGTGAAGCCAAGAACGAAAAAACTGCGAAACTCGACGCCGGATGCCCTACGCAGCAGCAACCCCTCAGAACGAGCCATAGAGTTGGGCCTCTGAGCCAACAAACCACCAGTACGCAGAACGTGGGGAAAGTGCAAAATGATCGGTTTGCCGGAATCAATGAAAGTCATTGAAAACCTGCTCTCGCCATCGTGAAACAGCAGGTCAGGCAGT # Right flank : CACACACTGCGAGGCGTTGATGTCGGCCCGCTGTCCGGCCACTGCGTCTTGGCAGCGACCGGCTCCGTACTCGCCTCCTGCTCGATGCGCCGTCAGCTCTCCATCGCAACGCCGTCAACCATGGTCATGTATCCGGTGATTCGGGCTTACTCGGACTTCTCCCAGCCGTGTACGGAGAACGGCTCGCCCTTGAGGTAGTGGGCGATCCCGAGAGCGTTGTAGGGGACGGTGGTGTCGGGAAGGTGGTCGGCGGGGTGCCAGGACAGGCCCGCGCATTTGTGCGGCTCCATGTTCCGCGGCTCGCCCTTCCAGTGCCGGGCGGCGAAGAACCAGCCGACCCGGGGTTCCCCCTCTGGGTTGCGGAAGTGCATGACGTGCACGATGCGCAGGGCCTCCCGCTCGACGGCGATGCCGATCTCCTCGAGCGTCTCGCGGATTACGGCGTCGAACACGTTTTCGTCGGGGTCGAGCTTCCCGGAGGGGAGGTTCAGTTGCCCGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 83113-83751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000027.1 Streptomyces sp. REN17 scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83113 29 96.6 32 ............................A CCTCCTGGCCGGGCACGGCCTGCTTCGCCGTG 83174 29 100.0 32 ............................. TCGCCCGCCTCGACCAGGGCGTCGGCAAGGTC 83235 29 100.0 32 ............................. TGCGGGCCCGGATCGCCGACGATCTCCGCTAC 83296 29 100.0 32 ............................. ATCGCGTGGATACGGGCACGGGCACGGCCGCT 83357 29 100.0 32 ............................. TCACCGAACTCGGGGAACTGGCCAGGGTCGGA 83418 29 100.0 32 ............................. GGCGACGCCGAGGTCACTGCCCGGGGCCGACG 83479 29 100.0 32 ............................. GCAACCGTGCCCTAGCCACGTGTCAGCTCGCG 83540 29 100.0 32 ............................. TACGCGCCCATCACCCTGGCCGTCGTCCTGCT 83601 29 100.0 32 ............................. ACCGAGTTCGCGAAGTCCGCGGCGCACATCCT 83662 29 100.0 32 ............................. GGACTGTTAATCCGTGTGTCCCTGGTTCAAGT 83723 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GAGAGACTGTTCAGCGCGCAGCGCGCCGGGCCGCTTACGCGGCATCGACCTTTCGGTACGTGGACATGGACAACATCATGCCAGGAGCTACGGCCCGGCGACGGTCAGGAAACCGCATCCGGCATCGGCCCATCGCCCCGAGGCTCAACCTCGCATGCCGTCCGGGACGGAGTAGCGGGACAGCGCTTAGCCACGCCACCGCGCATCCGAAAAGCGTCGGCCCCACTTCCTCGCCCAGCGCGCCGGCGACCGGCATGGACAAACAGAAGATCATCACTCCCATGGCGTCCTAGATGATGAGACGCTCTACGTAGTTGTTGGGGCGGCTGCGGCGGCGAGCACGTCCTCTTGCAGGCGGATCTGTGTCTGCTAGCAGACGTACCGAGTGAGTTGTGATATAGCCGTCACCCCACCTAGAGAACCTTTTGAGCGGAATGTGCAATTCGTTGAAAGTGATGGAAACGGCTCTGATCCTGAGGGAAACTCGCAGGTGGCGGAGT # Right flank : CGTGTCCGTCGGCGCGTCCGTAGTGGGCATGATCTGCTCCCCGCCGGCCAGGCGCTGCACCGACAGCTCGCCGTACCGGCCGATGTGGTCGAACACCAGCTCCTGGTCGTCGATGTCGGCGGGCTCCGGCTCCGCAGCGGGGACAACGGTGGCCGGACATGGCGCGGGCAGTCCGAGCGCAGGTCCAGCTGCTCGGTCTGCGGGTGAGTAGTCCAACGCAGAGAGTCTGTTGGCTGCGTTGGACGACTTGGTCGGATGGATACGGCCCGGTGAGCGCTGTGCGCTTCACAGTGCAGATGGCTCGGGACACGGGAGACGATCGCCGCTCCGCCTTCACATGTATCCCATGAGATCGACACGTTCTCTGCTCATTCGGTAGGCTCCGGGCGCTTCATCCGCACCACAGAGGGGGGATTCCTCATGCGTATGCGTCTTGTCCTGACCGCGGTGGCCACCGCTGGCGCCCTTGCCGCCGTCGTCAGCCCGGTCCAGGCCGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4891-3888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000076.1 Streptomyces sp. REN17 scaffold76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4890 29 100.0 36 ............................. AACTCCAGGCGTCCCGTGCGGACCCAGCCGTCCAGC 4825 29 100.0 36 ............................. AACTCCAGGCGTCCCGTGCGGACCCAGCCGTCCAGC 4760 29 100.0 36 ............................. CGCCGTTCGAACTGCTCGGCAGGATCGGGGACCTGA 4695 29 100.0 36 ............................. ATGACGACCAGGCGGTGATCCGGCGCTTCGGACGCC 4630 29 100.0 35 ............................. ATGGCGAGCCGGGACTGGCCGGCGGCTTTCGCGTG 4566 29 100.0 35 ............................. ATGGCGAGCCGGGACTGGCCGGCGGCTTTCGCGTG 4502 29 100.0 36 ............................. TGACCTGCCTGTCCTGCGGACACCGCTTCCGCTCCC 4437 29 100.0 36 ............................. ACCCAGGCGCCGCACCGGCCGCAGACGAGCTGTCCG 4372 29 100.0 36 ............................. ACGAGGCGCAGGTGCAGGGCCTCACGAACGCCGACG 4307 29 100.0 37 ............................. GCTGGGCCCACTCCCGGACCGGCACCGTCGCCAACGG 4241 29 100.0 35 ............................. CCTTCAGCGGATCCTTGCCATGACCCTTCAGACGC 4177 29 100.0 37 ............................. AGGAGGCTCAACATCATGGCCGTGGTCTTGCCCCGGC 4111 29 100.0 36 ............................. GTGCCCCTGCCGCGTGGCAGGCGGCGGCCGGTGCCG 4046 29 100.0 36 ............................. GCTGTATACCTCCGGGGAAGTCTCGCCGCACCTCCC 3981 29 100.0 36 ............................. AAGGTGAGCGGCACCGACAGCAGGGCGGGCAGGCCG 3916 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 100.0 36 GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Left flank : GAAGAGCTCGCCACCACCGTCTACCACCGCACCCTGAAACGGCAAGTCAGCTACGAAGAACTCATCCACCTGGAAGCACTAAAAATTGTTCGCCTCTGCCTCGAAGGCACAACATACAAGCCATTCAAGCCATGGTGGTGAAAACACATCTTCGTAATCCTCGTATACGACACCGCAACCGAACGCAATCCGAAAGTACTGAAAACCTGCCGCCAATACCTTCACTGGACGCAACGCAGCGTATTCCAAGGTGAACTATCCACCGCACAATACCGAGACCTGCTGCACTCCCTTGAAATAGTCATTGACGCTGACTACGACAGCATCGTCACCTACACCACCCGCTCACCCAGCATGATCGAGACGAACACGCTCGGAGTGGCTCTCGGAGGGCCAGGAGACATCCTCTGACCAGCCCTGATACACCACCGCCCGCCTGCTGCAAAAAAGCCTTGCATGTTACTGACAAACAGGGCTCTCACCTGCTGCTTTACACTCGG # Right flank : TGGAAGCACTGCATGTTGCCGTTCAGGGCATCCAGTGTCGTCATGGTGCGGTGACGGTGTGGGCCAGGACGGCGACGGTCTGGCGGCCGAAGCTGCCTCGGACTCACGCTCCGGTGAAGCGGACTTGGTCGGCCGCCCACTCGCCCGCCCGCTGCCACGGGCGCAGTCGCCCGAGCAGGTAGCCGGCCGCGAGGGCGGCGGCCGCGGTGACGACGACGGGCATCACGACCACCGCATTCCGATCGCGGACAGCAGCTCCATCCGCTCCGGTGTCAGCGTCGCCGCCCGGCTGCGCTGATTCCCGATCCATGCACCGAGCCGGTGCTCTCTCTCCTCCTGGCCCTCGCCGACGATCCGCTCAACCCACTTCCTCGGGACCTGGAGGTGGCCCTCGCGTTCGTAGTACTGCTTGGCGGCCTGGTAGTTCATGGCCCATTTGTCGGCTTGCGTACGGCGCGGGGGCGGCTTCTCGTCCTCGGCTGCGGGTTCGATGCCGAGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAGCCCAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 22147-18700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000064.1 Streptomyces sp. REN17 scaffold64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 22146 33 84.8 27 CG................A...........G.A ACACCCTCGGGCCCTCTGCAAGCGCCG 22086 33 78.8 28 .....T......AG........C....G.GC.. CGTCGGTCACGGTGGGCGGGGCATTCTG 22025 33 93.9 28 .........................C....C.. GCAATGCAGTCGCCGGATTCGACCTTGT 21964 33 90.9 26 .......T..........A...........G.. GAGGTAAAGATGGGCCCCGTGGGCGT CA [21934] 21903 33 93.9 28 ......T.......................C.. CGTACTCCGGGTGGCTAGGTGTCCTGTC 21842 33 90.9 28 .............................A.CT CCGCGCCCTCGTCGCTGAACACGCGGAT 21781 33 93.9 28 ..T..........................A... CGGAGGAGATGCTGGTGGCCCGGGTGAT 21720 33 90.9 28 ............A................A.C. ACTACCTCGGGTCGGCGTACACCTCCCG 21659 33 93.9 28 .............................T..T AGCCCACGCCGGCCCAGCCGTTGCCGTT 21598 32 90.9 28 .....-........................CT. ACCGCAGGTGGGCGACCGGGTCTTTCTC 21538 33 90.9 28 ........................A.....C.A GGACCCGCCCGGTGGTCCACCGGTCCGG 21477 33 93.9 28 ..............................A.T GCCGCGCTGCATCACCTTCCTCGCGAAC 21416 33 100.0 28 ................................. GCGGGGACATCCTGACCTCGACCCTGAG 21355 33 93.9 27 ..............................CA. GGGATTCCTTTCGCGAGGGTCGTGGAT T [21326] 21294 33 90.9 28 .............................G.CA CGCCCTCCTCGGTGAGGTAGGTGTTCAG 21233 33 90.9 28 .............................TAC. GGCGGCCGGTGCCCCCGACCTTCTCACC 21172 33 100.0 28 ................................. AAGAGGCGTTCCGCTCGATGCCGAAACG 21111 33 90.9 28 .............................GAC. GGCGGCCGGTGCCCCCGACCTTCTCACC 21050 33 100.0 28 ................................. AAGAGGCGTTCCGCTCGATGCCGAAACT 20989 33 90.9 28 .............................GC.G CCTTGATCCGGACCTCGGCGAGGGCCTC 20928 33 90.9 28 .............................G.CT GGCCACGCGCCGCCAGCTCCGGGCTCGG 20867 33 90.9 28 ...................A.........TA.. GCCGCAACCCGCGCTCGTACGCGCGGGT 20806 33 90.9 28 .............................TA.A GGGTGAGGTGGAGTTCCTCTGCGGCCTC 20745 33 84.8 28 ...........T........C........AC.G GTGGGTGGTCCGCTCCGAACAGCTCTGC 20684 33 90.9 28 ..T..........................TA.. GGGTGAGGTGGAGTTCCTCTGCGGCCTC 20623 33 84.8 28 ...........T........C........AC.G GTGGGTGGTCCGCTCCGAACAGCTCTGC 20562 33 90.9 28 ..T...........................A.G CCGGCGTGTTCCCAGCCGACATGACGGC 20501 33 87.9 28 .......T.....................GC.G CCTTGATCCGGACCTCGGCGAGGGCCTC 20440 33 93.9 28 ..............................A.G CCGGCGTGTTCCCAGCCGACATGACGGC 20379 33 93.9 27 .......T.....................T... GTGGGGTGGCATCCTCGTCAAGACCAG C [20348] 20318 33 90.9 28 ........G.....................C.T ACAGAGAATGGGGCGAGACCATGCCTGC 20257 33 87.9 28 ...................A.........ACC. CGGCCTCGCCCAGCGACTCGCACAGGCC 20196 33 93.9 28 ................T....A........... CCGTGGACGAGACGACCAGCCTGCCCGA 20135 33 87.9 28 ....................A........AC.G TGATGTCGGGGATGTACTGCTGGCCGAG 20074 33 93.9 28 .............................G.T. AGCGGATCCTGGGTCACGCCGACCCGAG 20013 33 93.9 28 .............................AA.. CCGCGGCCCGCCGCCTTGGCCCGGTGTC 19952 33 90.9 28 ..T..T........................C.. CGTGGCTGTTGAGGCTGAGTCGGTTCCA 19891 33 90.9 28 .............................AC.G GGCGGGCGGCCCAGAACGATTCGGGCAG 19830 33 90.9 28 ..T..........................A.C. CGCCGTCCGCGAAGCGCTGCGTGATGCC 19769 33 97.0 28 ..............................G.. CCGCCAGGGAGACGGCACCGCACGGGCC 19708 33 97.0 28 ..............................G.. CCGCCAGGGAGACGGCACCGCACGGGCC 19647 33 93.9 28 ..............................C.G GTGTCTTCCTTCATGACTGCGGCGATAT 19586 33 97.0 28 ..............................C.. CCTGACTTGGAGGCCAACACCCATGCCG 19525 33 93.9 28 ..............................G.T CCGGATGGAAGTCCCGTACCGGCGGATC 19464 33 93.9 28 .............................A..G GCGGGTTCGGGAACTACGCCGTCAGCTT 19403 33 93.9 28 ..............................C.T ACAGGCTCTCGCCGACACCGATCTTGAG 19342 33 97.0 26 ..............................A.. AGGCCGATCCAGGGGTCCGGGTCGGC GC [19313] 19281 33 93.9 27 ...............................AG ATGCGGGGAGCCGTCCTGATCTATGAG G [19253] 19220 33 97.0 28 ................................A TCGAGACCCTGGGCAGCGCCGGCCTCCC 19159 33 97.0 26 ..............................A.. AGGCCGATCCAGGGGTCCGGGTCGGC GC [19130] 19098 33 97.0 28 ................................A TCGAGACCCTGGGCAGCGCCGGCCTCCC 19037 33 90.9 28 .............................TCT. AGCTCCGGTCGCGGAGGCCCGTACGGCT 18976 33 84.8 28 ..T.......T..................T.CA GCTTCGCCTCGGGCGGCATCATGCCTGG 18915 33 90.9 28 .............................TCT. AGCTCCGGTCGCGGAGGCCCGTACGGCT 18854 33 84.8 28 ..T.......T..................T.CA GCTTCGCCTCGGGCGGCATCATGCCTGG 18793 33 90.9 28 ...........................T.G.C. TCGGCTGGAGCTTCGCCGCGTCCCTCGC 18732 33 87.9 0 ....A....................C...T..A | ========== ====== ====== ====== ================================= ============================ ================== 57 33 92.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGC # Left flank : TCCCGCCGCCACCGGCCCCATAGCCGGCGCGGCGATGTCCTCCCGCAGCCCCTGGAACGTCGGCGACAACTTCCCCAGATCATGCACACCACACAAAACCGACACCCAGCCCACCGCATCACCCAACGGACCGAACGCCCGATCCAGCTCGGCACGGCAACGCGGCCCCACCAACACATCCACCAGACCCTCAGCCACCACCGCCGTATCCAGCGCATGACAGATCAGCGGATGCGGAACCCGCCCCCCACCCGCCTTCCCCCACCCACCCCGAACATCAACCCCACCACGCTCCACACCAGCCACCCACCCATCCAAACCCACCCACCACCCCCAGCCACACACTTTCAGCCCACCGCGACCACCCCCACACCACGGCCCCGACCCACAACCAGCCGATAGAGTCACAACCAGCGAGCCCCGCACCGCCCGCACCTTGACTCGACAACACACCAAAACCTCAACCAGCAACGGCCACTCACGCACTCCTCCGACAACAC # Right flank : GTGCCTGACGCTGAAGCTTCTATAGATCGTCAAGCCGTGGGAGACGGCCCGGGTGCGCCGCTGAATGCGCTGGTGAGGTGGTGGTATACCTCGCGCGCGACGAAACGCTTGAGGCAGCGAAAGATGTCCTTCGTCTTGAGTCCTTCGAGGGTGCGTCGTGCGACGTAGTCGCGGGTGCGCGGGTCGTGGCGCATGCGGACCAGCACGATGGTGTGCAGGGCGCGGTTGGCCTGGCGGTCTCCGCCGCGGTTGAGGCGGTGGCGGTCAGTGCGCCCGGAAGAGGCCGGCACGGGGGCGGCGGCGCACAGATGGGCGAAGGATGCCTCTGAGGCGAGCCGTTCGGGGTTGTCCCCGGCGGTGACCAGCAACTGCCCGGCGGTTTCGGTCCCGACGCCCACCAGCGCGAGCAGGCCGGGTGCGGTACGGGCGATCAGGACGCGCAGGTCGCCGTCCGCGTCCGCTATCTCCTCGTTCAGGTGCTGGTACCGCTTGGCCAGGCG # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 24727-22864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000064.1 Streptomyces sp. REN17 scaffold64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 24726 33 93.9 28 ...............................GA GGTCGACGTGGAGGTCGAGGGTGTCGGC 24665 33 93.9 28 ..............................A.C TCATCCTCAACCGCACCCACGCCTGACT 24604 33 93.9 28 ..............................GT. AGGGTGCACAGCCCGTCGGCGCTGATCT 24543 33 97.0 28 ...............................G. GCAGGTCGAACGCCAACTGCGCGGTGGA 24482 33 93.9 28 ...............................GT GGCGGGCGGGGGGCACCTGCTGCCGCGA 24421 33 90.9 28 .............................TA.C AGGCCGAACTGGCGAAGCTGACGCCGAG 24360 33 90.9 28 ...T.........................TA.. AGGAGGAACTCCGTCAAGCGCTGTCCGT 24299 33 97.0 28 .............................A... GCGCTGCTGGTCGGTGGACTAGCCGCAG 24238 33 90.9 27 ...............A....A........T... GTTGTCGGTGGTCGTGGTGCCGGTCGC A [24209] 24177 33 93.9 28 ...........T....................C TCCTTACAGGGATGCGGGCGCCAGATGC 24116 33 93.9 28 .............................A..T CGGCGAGGACGGGACGCTGGGCCGGGCC 24055 33 90.9 28 .C...........................G.G. CGGCCAGCGGGAACGTGACGCCGTTCGA 23994 33 90.9 28 .....T.........................GA CGCCCTGCGGCAGCATGTCGAGGCGGAG 23933 33 90.9 28 .............................G.GT TCGCGTTCTGCGACCGCGGGGAGTCCCT 23872 33 90.9 28 ..............................TGC CCCGGACCGGCGGGAGTTGCCTGCGGCG 23811 33 100.0 28 ................................. GTCGGTGCCTGGTCGTACACCGTCCACC 23750 33 90.9 28 .............................T.GT GCTCGGTGAGCAGGTCGACGGCTTCGCG 23689 33 93.9 28 .............................GT.. GCGGATCCTCGGGTCCGGTGTGGCCGCA 23628 33 100.0 28 ................................. GTCGGTGCCTGGTCGTACCCCGTCCACC 23567 33 100.0 28 ................................. GTCGGTGCCTGGTCGTACCCCGTCCACC 23506 33 90.9 28 ..............................AGA CTTGCAGGGCGGCGTACAGGTCGCCGGT 23445 33 90.9 28 .............................GA.C CGATCGAGCCGCAGCGCAACGTGCGCCT 23384 33 93.9 26 .............................A..A CGCTCGACCTCGGCCGCGACCTCCTC AG [23355] 23323 33 90.9 28 ............................C.A.C ACTGCCCGTGCTGCGGCGAGCGGTTCGT 23262 33 93.9 28 ..............................TA. CCGTGAACTCCGTAACCGCCGCGCATAT 23201 33 93.9 28 .............................G..C CGCTGGTGGGCGGGGCCTCGGTGTCTGT 23140 33 87.9 28 .............................TGAC ATGGCGTCGCGGTTCCTTCCGTCGCGGT 23079 33 90.9 28 ..............................AGT GCCGCGCTGCATCACCTTCCTCGCGAAC 23018 33 90.9 28 ..............................TGC GCGGGGACATCCTGACCTCGACCCTGAG 22957 33 93.9 28 .............................T..A CGGGATTCCTTTCGCGAGGGTCGTGGAT 22896 33 93.9 0 ...............................GT | ========== ====== ====== ====== ================================= ============================ ================== 31 33 93.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCG # Left flank : CCCGGTCACCGCCCAGCTCCGCGCTCAGGTGCTGGCTGCCGTGCCGGGAGCAGAACTGAAACCCCGACAGCTTGCCGATGTCATGCAGTCCCGCACATAGCCCCACCACCGCCCGCGCGCGTTCCCACTCACCCGCCAGCCCCATCCCCTCAGCGATCCGCACCCGCTGGTTCTCCGACAGGAAGACATCCCACAGGTGCAGCGCCATCGCTGCCGCATCCAACAGATGCCGGATCAGCGGATACGGCGCCAGCCCCGGATCCAGCCCTCGCGACTTCCCCCACACCGACTCATCCGGCGCCCCCCACTCCCCCACCATCAGCCCCTCCACTCCAGCCCACACACCACACCCCGCCACCGAAGCCGGCATTCAACCACCCCCCACCGACAACAGCACAGCCCCGTTAAGGTGACGACATGCGCCGCTTCCCGTCCCACCGCAAAGCCCCCTCCAATGCAAAAGAAAAGCAAAGCCCTTCCTGAGCCGCAGGTCAGAAAGG # Right flank : CGTCGCCCACCTCCACCACCTCCCGCGCCTGGCGCACCGACGCAGCCGACGGGATCACCCCATGATGCCCGCCCAAAGCCCAAGCGATCGTGCGCGCCGTCGCCGGCACCGCCCCCCAGGCCTTGAGGATCCGTGTCATGTGGACCGCCGTCAGCAGACCGTGATGACAGTCCGTACGCGCCCCAGGCTCCCTCCACCGCGTCAACCGCCGGATATGTCCCGCCGCCACCGGCCCCATAGCCGGCGCGGCGATGTCCTCCCGCAGCCCCTGGAACGTCGGCGACAACTTCCCCAGATCATGCACACCACACAAAACCGACACCCAGCCCACCGCATCACCCAACGGACCGAACGCCCGATCCAGCTCGGCACGGCAACGCGGCCCCACCAACACATCCACCAGACCCTCAGCCACCACCGCCGTATCCAGCGCATGACAGATCAGCGGATGCGGAACCCGCCCCCCACCCGCCTTCCCCCACCCACCCCGAACATCAACC # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 34586-36017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000064.1 Streptomyces sp. REN17 scaffold64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34586 29 100.0 32 ............................. CCCGGCGACGGGGCCGACACCGCCACGCTGTC 34647 29 100.0 32 ............................. ATGCCGCGCGTCGTGAACAGGAGCGGGCCGAC 34708 29 100.0 32 ............................. GCAACGAGCACACAGCGGCGCCTGCACTCCGC 34769 29 100.0 32 ............................. CTCCCCGAGGCGCCGTGCGGACGCGAATAGCT 34830 29 100.0 32 ............................. TTGGCCAAGCCGTCGGTCATGCTGGCGATGAC 34891 29 100.0 32 ............................. CAACAGGTCGCCATGGAGCATGTCCTCAAGGC 34952 29 96.6 32 .....................A....... CCCTTCGTCCACGGGCTCGCGGCCCGGCCGAG 35013 29 100.0 32 ............................. ATCCGCGCTCCGTGGACATCCGAGCAGGTGGA 35074 29 100.0 32 ............................. GTCGGCTACGACAACAAGACGATCTTCGGCAA 35135 29 100.0 32 ............................. CCCGGCGCGCTCGACGCGCCCGAGCTTCCCGC 35196 29 100.0 32 ............................. CGCGCTGCATCGACACGACCAGCGAGACGCCC 35257 29 100.0 32 ............................. GTGGTTCCGGTGGCGTTGTAGGTGACGAGAGC 35318 29 96.6 32 ........T.................... TTGGAGGTGATCCAGGGCCCGGACGCCGCGTC 35379 29 96.6 32 ......................G...... AGGTAGATGATCCCGGCCAGCGCGGGGAGCAG 35440 29 100.0 32 ............................. GTGGAGGTGATCCAGGGCCCGTACGCCGCGTC 35501 29 100.0 32 ............................. CGCATGGACGACAAGAAGGCCGCCGCCCGCCG 35562 29 100.0 32 ............................. AGGTAGATGATCCCGGCCAGCGCGGTGAGCAG 35623 29 100.0 32 ............................. TGAGCGGCTCGGGCAGTACGGCGAACCCGATT 35684 29 100.0 32 ............................. AGGTAGATGATCCCGGCCAGCGCGGTGAGCAG 35745 29 100.0 32 ............................. TGAGCGGCTCGGGCAGTACGGCGAACCCGATT 35806 29 100.0 32 ............................. ACCGTGAGCAGGGCACTCTCCCTGCTCAAGAG 35867 29 96.6 32 ...........T................. CCGGACACCTCGGTCATCGCCGCTCCGGGAAC 35928 29 100.0 32 ............................. CCCGGCTGGGGCGGTGCCGCGACTCCTGGCCG 35989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Left flank : CGTCCAGGACGTCCAGTTCCTCCTGACCCCACCCCACACGAGCACACCCGACGACGACACCGACGAAGAACACTCCGAACGACGTGACGTGCGCATGGTCCACCTCTGGGACCCCAAAACCGGAACCCTCCCCGCAGGCGTCAACTACGCCCAAGGAGGCAACTGATGCCCTCCATGATCGTCATCGCCACCACCGCGGTCCCCGACCACCTACGCGGCGCCCTCAGCCGATGGACCAGCAAAGTAGTACCCGGCATCTTCGTTGGCAGCGTCTCAGCCCGCGTCCGCGACGAACTCTGGCACACCGTCACCGAAGTCGTGGGCAACGGCGCAGCCCTCCTCGTCCACCCCGCCCCCACGGAACAGGGCTACGCCATCCGTACCGCGGGAGCCCGCCGCCGGGTCCCTGTCGATTTCGATGGCCTTACCCTGATCCGTATGACCGCTGCACCGAAGGTAAAGGAAATGCAAACCCCCTCTTGAAGTGCAGGTCAGAAAGG # Right flank : GGCGGCCACCCGCCGCCTCCTGGACATGCACGGGCGCGCGTCAACGGATTTCGATGAGCCCCTTCCTGCCGCCCGTGTGTCTGCTGGGCGGATTGACTGTCACCGGCCGACCCGCTCTATCGTTCTCGCGTTCGCATGCGCCCGGTCGGACGCGGCGCTCCAGCAGCTCGGGCAGACTCGGCCGGGAGCGGCCATCGGCCCGTTTGCGGTGGTGCGGTTGCCGGGGACGGGTGTTTCGTGTCGGGGGTGCTGCCGTGCCTTCGGGGCGGTGCTTGTGTCTCTGCCGCTGACCGTGACCAAACAACTGATGATGTGATCTGGGTCACTTATTCGGGTGGGTGGTCATTCGGTTGTCCGATTCTGTCGCACCCCTCAAAAAGGGTGGTCGGTCTTCTTTCCGCTGATCACCCGGGGTTTAAGTCGGGTTGCGCAGAGTGGCGGCCGGGGTCTGTGCTTGTCTGTTTGATCACCTTGTGTCAGAAAATGATCACGTGGGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGATGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGATGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.30,-12.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182881-183335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHKJW010000012.1 Streptomyces sp. REN17 scaffold12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 182881 29 100.0 32 ............................. GTGCTGGAGCTGGACCCGCGGACCGGCTGGGT 182942 29 100.0 32 ............................. ACCTGTCCGCGATCGTCGCCGACGACAAACTC 183003 29 100.0 32 ............................. CGCTACATACGGCTCCGCGCCGCACTGAACGC 183064 29 100.0 32 ............................. GAACGCCCGACCCGCCACACGACAGCCTGTTG 183125 29 100.0 32 ............................. TCCATGAGCACCAGCCCCGGCCCGGACCTGAT 183186 29 93.1 92 .......................CG.... GACGACGAACCATGACGCTCGCCGAGCTGATCGTGGACCCCGCCCTTGTGAGGATCGTCGTCTTACCAGGGACGGCCGCGCATCGTCCTGGA 183307 29 79.3 0 ..G.........T.G....A...CG.... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 7 29 96.1 42 GTCGACCCCGCGCCCGCGGGGATGCTCCG # Left flank : GCATCGGTAGTGGGCAGTGTCTGCCTGCGGACTGGAGTGGGGCTGCTTTGTATATGGGCGAGGACTCGGCTTCCGTGGTCCCCGCCGAACCACCCTTGTATCGGCGGGGACCACGGAAGCCGTCGCGCGGCACTGAAATTTCGCAGTCGAGGACCTCTGACCCACCGGTGAGAACAGGGGTCGGCAGACATGGGGTGGGGGAAACAACGGTTTGGCGCCAAGGGCTCAGCTGTGTTCTGGGCCGTTGCGCCATCGTTTGACGGTGATGATGCCCATCCCGGTATGAGTGGTCGCCGCGCGGCTGGGCAGGTGGCGTGTCGATCGCATTGGCCGTCGAAGCGAACCCGGCAGTCTGTGCATGGGCTCCCAACGCGGTGCGGTAGACCTGTTGGGTCATGGGAAGAGAGTGTTGGGTAGTAGTTGTGCTGCTCCTCCACGCCGAGGAAAAGCAACTGAATGAAAACAGGCAGCCTGCCTACTAAAGTCCCAGCTCAGCAAGT # Right flank : GTTCGACCTGTCCAGGTTAGTTGCGCACTGGAAGATTGAAGAAGCGTGTATTGCCTGTCCAACGGGACACTCGTCTATTGCTATCTGGGCAGTTTTGGGTGAGTGCTGAGAGAACTGGACGACGAGGAATTAGATGCTTCAATCGCTCACCCTCCGTTCCTGTTCGGGCATCGGTGAAAATGTTGCCCACCTCGCGCACGTTGGGTCGGAGTGAGCGTTTAGAAGGCGCCTGCTCTATCCCCTGGCTTACGGGGTTGACCTGCGTAAACGCAGTCCCCTAGGACTGTCCCCCGAGGCGTGGGGGACGTATGGGGGAATCGCGGATTTCCCTGGTTGGGGGACGCGAGCGCTCTTCGGCTGGGCCGTAGTTAGGGTTTCACGCCTCTTTACGCTTCCGAAGCCTCTCACGGAAATAATCCTGCACCTTCCCGGCGTTGGTGATCTCCGAGCCGAGGGGGGAAAGTGTCGGGCCTGAAGCTGTTTCGCGCGGACACGACGAA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCCCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //