Array 1 7208-6578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOF010000028.1 Listeria ivanovii subsp. londoniensis strain MF6989 MF6989_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7207 36 100.0 30 .................................... GAGAAAGCTAATCGAAAGTTAAATGTGGCA 7141 36 100.0 30 .................................... AGCGTCAATTTGATTTCAAAAACGCTGGCT 7075 36 100.0 30 .................................... AGAGTTTTCGCAGGCAAGTCCTCGAAGTTA 7009 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 6943 36 100.0 30 .................................... GACAAAATTAGCTTGGTATGACAACAAGAA 6877 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 6811 36 100.0 30 .................................... AGAAAATAAGGCTTTTATGAAAATGCTCGG 6745 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 6679 36 97.2 30 ..........................G......... GTTGGCACTTCTTGGAATTACGGGTCCGCT 6613 36 86.1 0 ......A.................G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCTAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCTTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAAGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGGTTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : AAACCATCTAATTTCGGTTTGTTTTTTTATTTACCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATTGGCAACCAACATATTCGTGGAAACTCCTGAAATGAGACCTGGCTGAAATAGCAGATGAACGTTTTCGCAATGTTGTTACTTCTATGTCTAAACAAGCTTATTTAGCTATTGGCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTGTTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGAGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATTAATAAGTGGGAGAGAAGTGGCGTAAACTTTAAATCCATTTGAAGCGTTTTATTACACATATTATAAGAAGCTATTCTACCTATTTAATAGACATCTATACTTTTCGGACGCTTATTATAAATTTTTTTAGAATAATAATGTAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 167093-161188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOF010000003.1 Listeria ivanovii subsp. londoniensis strain MF6989 MF6989_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 167092 36 100.0 30 .................................... TGCTATTCCTGGTAGTGGAGAATTAGCAGA 167026 36 100.0 29 .................................... CAAAATATCCTCGATGCATTAAATATAAA 166961 36 100.0 30 .................................... CTTGTTGATGTTATCCCTGTTAGTAGAATA 166895 36 100.0 30 .................................... TCAAGAAGCGACAACACTTGCAGCACATAT 166829 36 100.0 30 .................................... AATCTAAGAAAAGACATCATTGCTTATTCG 166763 36 100.0 30 .................................... TGTCAATTTGTGGTAGTTCGAACAGCGCCA 166697 36 100.0 30 .................................... ATCTGCTATTTTTGGGTCTCTCGGAGAAGA 166631 36 100.0 30 .................................... ACTTTATCTAATCTTAAAATTTGATGATTA 166565 36 100.0 30 .................................... CTTTACGCAATGGTCTAGATACAGGTGCAG 166499 36 100.0 30 .................................... ATTGTCACGAGTGAACTTTGTAACGGCTTT 166433 36 100.0 30 .................................... CTATACGATAGCATGGACGGTAATTTAGTA 166367 36 100.0 30 .................................... TCTTTTAACTTTGCGTATACTGCAACAGCG 166301 36 100.0 30 .................................... TCTTTTAACTTTGCGTATACTGCAACAGCG 166235 36 100.0 30 .................................... TCTGGAAATATGACAACGTGGGTGCTGTAA 166169 36 100.0 30 .................................... TATACGCTGTTTTAGAGTCCCAGTCAGGCG 166103 36 100.0 30 .................................... CAATGTGAAGCGACTGAAACAGTCACTACA 166037 36 100.0 30 .................................... ATCAGTAACGTTGCACAAGCTACGTCATAC 165971 36 100.0 30 .................................... TGAAACAATGTAATATATATTGAGTAACAA 165905 36 100.0 30 .................................... TTCGCAGTCAATACTTGGCAAACAAATGGG 165839 36 100.0 29 .................................... GACTCCGCTGCTTTTATGGTTGATACAAA 165774 36 100.0 30 .................................... CTAAGACGGTTCTAAAAGGACAAGAAGCAG 165708 36 100.0 30 .................................... GTATTTCTTCGCCAAGTTGCGACACTCTAT 165642 36 100.0 30 .................................... ATATCCGTGCGCTTAAAGCATTGTGTGCGT 165576 36 100.0 30 .................................... GCGGTCGAACCAGAACATTCGACTACCGCA 165510 36 100.0 32 .................................... AATATTTGTTTTTGATTGTATCGCTATCTAAG 165442 36 100.0 30 .................................... GCATTGTATTGCGTTTATATCAAACATCAA 165376 36 100.0 29 .................................... AATTTAAGAAGTTGATACGAGCGTACGAT 165311 36 100.0 30 .................................... TCTTTTCTGGAACATATGCTGGTAAAACTA 165245 36 100.0 30 .................................... AGGGACTAGCGATAGTGAGCAAGCGAAGGA 165179 36 100.0 30 .................................... AAATACAACGCGCAAAGCGTACGGACTAGA 165113 36 100.0 30 .................................... GCTCACTTGTCAATTTAGTTGATTGACTGT 165047 36 100.0 30 .................................... AAAAAGAATTGATGGAAAAGGAAGTTAATG 164981 36 100.0 29 .................................... AATGAAGAATAACGCTGCTATCATCGCAA 164916 36 100.0 30 .................................... AGCAAAAACAGCGTTGGTTGGTTGTAAAAT 164850 36 100.0 30 .................................... TTTATAGATGAAAACGGAACGTTTAGACAT 164784 36 100.0 29 .................................... AGAACTTCAAGCTTTGCTTGACAACGCAA 164719 36 100.0 30 .................................... ATATAAAGGATATTGGTGGGTTTGTAGGTG 164653 36 100.0 30 .................................... AATGTCAATAAAAGTCTGTCCCTTCCCTTT 164587 36 100.0 29 .................................... ACCAGCTTTTATTTTAGAACCCTGCCCAT 164522 36 100.0 30 .................................... AATCTAATGACTGGAACAAGAAGCTTGAAC 164456 36 100.0 30 .................................... AATATGCAAGTTTTCAACCGCTTCATCCTT 164390 36 100.0 30 .................................... CTGTATAAACAAGAGCTTGTAACAGTCGAG 164324 36 100.0 31 .................................... CTTGCATTTCTTGCTACCTTTCCGCGAATTA 164257 36 100.0 30 .................................... AATAGATATTATGAAAGTTTTTTCAAGTGA 164191 36 100.0 30 .................................... TAACAGCTATCAATTTGTAACGGCAAACAA 164125 36 100.0 31 .................................... TAGAAAAAGGGAAGGATTTTGCGGATGGATA 164058 36 100.0 31 .................................... TCCAAACAGGATACGTCAGATGAAGAAGAGC 163991 36 100.0 30 .................................... CCGTGCTTTACGGTGAAGGTGTCTCAAAAG 163925 36 100.0 30 .................................... CTAATATGGTGTGCTTGAGGAAAGTGGCTA 163859 36 100.0 30 .................................... GCGCTTACAGTATTGCAAAAAGATTTTAGA 163793 36 100.0 30 .................................... GAAACAAAGCAAGCTAAGAGCATTTGTAAA 163727 36 100.0 29 .................................... ACGTTGAAAGACAAAGTATCCTCAGCCAT 163662 36 100.0 30 .................................... CTCCGCTTTGGAGAGCCGTAACAAATGCTT 163596 36 100.0 30 .................................... CTTTGACAATAGAAAAAAGCTTCTTAGCTG 163530 36 100.0 30 .................................... ATTAGCTATGAAGCATACAAAGGAGAGGGT 163464 36 100.0 30 .................................... TGGAGGAAGCTTTGATATTGACCCACGCGA 163398 36 100.0 30 .................................... AACGCTTGCCCCATAGTTATTAGGGAATCT 163332 36 100.0 30 .................................... GAAGACGCAGGGATTAGCACAGTGATGCAT 163266 36 100.0 30 .................................... ATCTCCGTCTGCAACCACATAGCGGACGTT 163200 36 100.0 30 .................................... CATTTCTTCGTTGTCGCTAGCGTCTTCACC 163134 36 100.0 30 .................................... AATTCCGTGAAATTAATATTTTTTGATTCG 163068 36 100.0 30 .................................... TACGTTTGTAATCCACTTAGACAAGCGCAA 163002 36 100.0 30 .................................... CTTTAGCAGTTGTGAGCGGAAGCCCAGACT 162936 36 100.0 30 .................................... TATACGTCTAATAATATAGTTTTTGGCCGT 162870 36 100.0 30 .................................... AGCACTTAGTTCTAAAGTTTACACCATCGA 162804 36 100.0 29 .................................... AAATAACGTTTTTCCCGTCATTTGTGTAC 162739 36 100.0 30 .................................... TTGACAGCAAGTGTAAAAGTCGCAACTGCT 162673 36 100.0 29 .................................... TCTCCGAATTACAAAACGGGCGATGAGAT 162608 36 100.0 30 .................................... AATTAATTAACTTACTCTCATCTTCTACAA 162542 36 100.0 30 .................................... TGATTATGAAGAGAGCGAAGCAGATGGGGG 162476 36 100.0 31 .................................... AAAATTATGTCGAGAAATACATGTTACGACC 162409 36 100.0 30 .................................... CTAAAGTAACTAACACCACATCGGAAGCAG 162343 36 100.0 30 .................................... AGACAACCCTTGAACTAAATGACTTCACAG 162277 36 100.0 30 .................................... TCATAGATGTTCTTGCTACGGTCTCTTGTT 162211 36 100.0 30 .................................... AGTTATTTTGTCTACACCGGACGGTACAGT 162145 36 100.0 30 .................................... GTTAGGGTATACTGTGCAAGTATTTTTATT 162079 36 100.0 30 .................................... ATTGTTTGTCAACAAGATTACTTCCATATT 162013 36 100.0 29 .................................... AAAATTGATACAAGACCGGACTTATGGTT 161948 36 100.0 30 .................................... TTCGTTTTCACGACTTACGGCACACTTCTG 161882 36 100.0 30 .................................... TAGGTGTGCCTTTCTCGTTGTAGCCTACAG 161816 36 100.0 30 .................................... TAGAAATAACAGATGTGATCGCAACAGCGT 161750 36 100.0 30 .................................... ATTTATTGTTTTTGTGGAAACTATTAGCAA 161684 36 100.0 29 .................................... GACAAAAGCTAATATGTTGTATCCAGACG 161619 36 100.0 30 .................................... CGGCTCGCCTTTTATTAATCGTAGTTCCTG 161553 36 100.0 30 .................................... AGGTGGTTCAATTAGTGAAGAGTAACCAGC 161487 36 100.0 30 .................................... TGCCGTTTCGACTTCTTCCAAGCTAGCTTC 161421 36 100.0 30 .................................... GAAATATCAGCAATCAAGTGGAACAAAGAG 161355 36 100.0 30 .................................... TTATATGATTGATGCGTTGATACCACCTAT 161289 36 100.0 30 .................................... ATTTTATCTGGGAGAAAATAAACAATGACG 161223 36 80.6 0 ..................ACA...AC.....A...A | ========== ====== ====== ====== ==================================== ================================ ================== 90 36 99.8 30 ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Left flank : TAATCTATATGCAAAAGAATTATTTAATAAGCAAGTTTTATTTTTTATAGAAATGCCAGAAAAAACCATAATTTCAGAAGAGGGAATAAAGAAATTTCAATTACATGTTGAAAAAATGTTAACAAGAGGAATCAATGTATTTATTATTTCTGAGCATATTTGGATGGATGGTGTAACTAACCATTTTTATTTTAATGATGTTGTGAATGAATTACAAATTTTGGCGAAAAAAGAACAAATTTTTGAAAGAATACCTTTATTTGTAGAAGAATCGGATTGGATAAAAGCAATAAATTGGTCTATGTTAGCTGTGGATAACTATGGTGGAAAAATGGTCGAATTAAAGTTGGAAGCTGTGGATAACTTAGTTGTATTTGTATTAGTTTATTTTATTTTCATTTATAATGAATGGCGAATTATCGTTGACTACAAAGGAATTCCCGCAAATATTATTGTTTACCTTGATAGGTTGATTTAGGTTGAGGTATAATGGAAAAGAC # Right flank : TTCGGTAGAATCACCGCGAACCAATTCGGTTAAACAAATGTGAATGGAGCTAATTGATTTTGGAATCATAGAAAAGTTGTAGCGGATAACAAAAAAGATATCTATTAATTGGCGAAAGTAGACAAAGTTTATTCAAAACAAACCTATATCACGGAAAACTAGCATCCGGAAGCAAGTTAAATGAGCGGAACTAACACTCAGGTGGAATAAAGATTATGAAAAGAAAGAATAACATTTGAATTAAATATAGATTATGTTTAAAATCATCAGCCCACAAAATCAATACAAATGTGTCCCTCTAGAGTCAATAATCATCTCTAGAGGGATTTTTAGCCAGAGAATTAAACCTCCTTGTCGTTTTCATCACAATCTAATGACTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAAGGAATAAATTTTCAAAATTAGCTAAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //