Array 1 10658-9107 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZM01000053.1 Campylobacter concisus strain AAUH-10HCdes 1104425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10657 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 10590 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 10525 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 10461 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 10394 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 10325 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 10257 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 10190 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 10124 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 10057 30 100.0 34 .............................. TCTATTGCTTTGTCGATTACGGCGCTAACCCAAG 9993 30 100.0 37 .............................. CTTGGAAAGAAAGCGACGAAAAGCAAACTTGGTCTAG 9926 30 100.0 36 .............................. AACTGGTGAAGTTGGCCTATAAGCTCTCCACTTCCG 9860 30 96.7 35 .........................A.... GCGTCACTTTGCAAAAGTCACTAACCGCTCCGCCG 9795 30 100.0 36 .............................. TTTATCGCCGTTGAAACAAAATCCCCTTATTTTGTA 9729 30 100.0 36 .............................. TCAACAGTCTCAGGCGACCAACAACCAACTGGAAAA 9663 30 100.0 34 .............................. GTAGATTGATTGATTGTATTGTTTGGCTGCTAAA 9599 30 100.0 36 .............................. AAAGCGTGGCAGCACCCTCTTTTCCATAACCAATAG 9533 30 100.0 34 .............................. ATTCGTCAAAAGCAGAATACAAAGATCGACGGCT 9469 30 100.0 37 .............................. GTGGTTTTGTTTCTTGGCGTGGCACCGAGTGGATAAA 9402 30 100.0 36 .............................. CCTATACCACTACCAGCAGTCCAAATGATAAGCTCT 9336 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 9268 30 100.0 34 .............................. GTTGAGCTTGTAGGTAAATTTTACAAGGCTAACT 9204 30 100.0 38 .............................. GAGATAAAGCTTGCGACACGACAATAAGACTTTTTTGC 9136 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : ATATGTTTTCAACTTAATTTTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 11264-9938 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZM01000055.1 Campylobacter concisus strain AAUH-10HCdes 1104427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 11263 37 94.6 37 ......................TT............. TTGTTTTGTTTCTCACCTTTAATAACTACTGAATAGT 11189 37 94.6 35 ......................TT............. GGGATGTAGTTTAGATTCCTAGCGATTTTATCGCC 11117 37 94.6 42 ......................TT............. TTATCTCGACTTCAAGTAATTCAGCTGTTTCTACAGCAACAT 11038 37 94.6 39 ......................TT............. TTTCTTCGCAAGTATTAGAAATATGATTGATCCTACGAT 10962 37 94.6 36 ......................TT............. GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 10889 37 100.0 37 ..................................... GTACTAAGAGATCATATAATCCCCATCTAACCTTAGT 10815 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 10738 37 100.0 36 ..................................... GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 10665 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 10588 37 100.0 40 ..................................... CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 10511 37 100.0 39 ..................................... TGCTTTTGCCATTAGTCTTTCTTTTAGAGATGCCATTGT 10435 37 100.0 40 ..................................... AGAGCTATATAGACACCACATCTATCATCACCACCTAAGC 10358 37 100.0 39 ..................................... CACTTGCAAAACCACAAGAAATAAGAGAAAGAATAATTA 10282 37 97.3 35 ...................A................. GCCATAGTGTTCTCCTCTGAATAAGATTTAATTTC 10210 37 94.6 43 ....TT............................... GTTATACATATAGCTTCTCTTATTGTAAACTGTAGCTTAGGAT 10130 37 94.6 38 ....TT............................... GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 10055 37 94.6 42 ....................C..T............. ACTCCAGCGATGAACGCTGCAACTATCTTAGCTTAGCGAGAA 9976 37 94.6 0 ...................................TT | A,T [9941,9960] ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 96.8 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGTGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGAGTTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTGGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTGATTTTACGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TACATGTATATGTAAAATATTAGAAATAAAGGATATGGCAATAAGAGATCATAGAAGTAATAGTAAAAGTAGTGAATGTAAAAAAACAATCTTATAGTAAGTAAAATGTAAAAAGTATGATGATGAAAGTAAAATCAAAAATACAATGATAGTAACGGCAGTTAAAATAGAAATAAGCTTTATAATGTCGCTGTATATGGAGATATTATCTCTATAATCTATAATAAGTCTTTATTGCTCATCACATATCTCCTCATAAATTTTTGAGCCTATCTTATATAGTGTATATGCTGATATAGCAATTTTAGTTATAGCCTCTATGGTTGGTATTATTAAAATTGGCATGTTATCTACCTTTTTTGTCTGTTAAAACGTCGATAGCCTTTTTGGCAACATAAAACTCAATAGCAGCTTTAGCGAGCGCCTCTAAAATTAAAACAAATGGCATATTTAACCCTCCCATTTTTGATTTTTTACATATTGGCAAGTGACTTGCTACC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 14593-14250 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZM01000055.1 Campylobacter concisus strain AAUH-10HCdes 1104427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 14592 37 86.5 38 ..C.TGTT............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGT A [14589] 14516 37 97.3 40 ................................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGT 14439 37 100.0 35 ..................................... TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATA 14367 37 100.0 44 ..................................... CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGA 14286 37 81.1 0 ....................C..T.......AT.GCG | ========== ====== ====== ====== ===================================== ============================================ ================== 5 37 93.0 40 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTTTAGTGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTT # Right flank : ACCCATACCACATTTAAAAAGGTAAATTCAAAATGTTTACTAAAAATCTAGAACACATATTTACAAAAGCTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGACGAGATCTCGTATGCTGATTTTAAGAAGAACTTTGACGAAAACGCAGACAATCTCATAAGCTCATTATTAAATGGCACCTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTTAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAACAGAGCCAGCAGTTTCATAAACGAAAATGACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTAAAAATTTTG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //