Array 1 17388-15892 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXJ01000047.1 Salmonella enterica subsp. enterica serovar Singapore strain BCW_2852 NODE_47_length_31540_cov_2.29249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17387 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 17326 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 17265 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 17204 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 17142 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 17081 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 17020 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 16959 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 16898 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 16837 29 100.0 32 ............................. TCGTAGAACAGCTCTGCTTCCTTTGCGGAGAC 16776 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 16715 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 16654 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 16593 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 16532 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 16471 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 16410 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 16349 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 16287 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 16226 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 16165 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 16104 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 16043 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 15982 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 15921 29 93.1 0 A..............A............. | A [15894] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85211-86519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXJ01000016.1 Salmonella enterica subsp. enterica serovar Singapore strain BCW_2852 NODE_16_length_88691_cov_2.41662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85211 29 100.0 32 ............................. GGCCAGCCGAGGTCTTCGGAAACATACCCATC 85272 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 85333 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 85394 29 100.0 32 ............................. ACACCCGTCGGGGGAAGCAAGGCGGACGGGAC 85455 29 100.0 32 ............................. GATAGCGCCTCGCCCACAGTTGCAGTGTTTGC 85516 29 100.0 32 ............................. GCCCCGCGTCTGTTTTGGCTCGTCGGGCCAAT 85577 29 100.0 32 ............................. GGCGTGCGCACTCAGTGCGTACTGGACGCATT 85638 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 85699 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 85760 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 85821 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 85882 29 100.0 32 ............................. ACGTTATGGTTATCCATGAGGTTGCACGCGAG 85943 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 86004 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 86065 29 100.0 32 ............................. AATCCGTCGCTGCTGGTCGTCGGCAAGAACAA 86126 29 100.0 32 ............................. CTGGACTGATCAGGCTGGAAATTGGTCAGATA 86187 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 86248 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 86309 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 86371 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 86431 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 86492 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //