Array 1 34038-33211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFMT01000078.1 Campylobacter jejuni strain isolate_W40 NODE_30_length_94963_cov_93.014809, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34037 36 97.2 30 T................................... TGATTTATTAGTAACCCATCAAGTTGGCTT 33971 36 100.0 30 .................................... GCACCTGTTTTTGATTGAACAAAACAACCA 33905 36 100.0 30 .................................... TGCACTGAAATAAATGAGTTTATAGCAAAT 33839 36 100.0 30 .................................... AGAAAAATCAAATTGTGTAACAGGGGTGTT 33773 36 97.2 30 .........T.......................... TTTGCGACTTTCAATCTCTTTAATTGTTTG 33707 36 100.0 30 .................................... AAATTACCTTTTGAATATATAAAAAAAGCA 33641 36 100.0 30 .................................... GCATTGCTTTACTACATAGCCAGTCGTGTA 33575 36 100.0 29 .................................... TTGTCAGTTTAGATATGACAGGAAGTTTT 33510 36 100.0 30 .................................... AAAAGCGATAATCTTGCTTTAGGTAGTTTA 33444 36 100.0 30 .................................... TTTTAGAGAGAGAATACAGGGAATTGGAGA 33378 36 100.0 30 .................................... AATGCTTTCAAAGAAAAAGATTTACCACAC 33312 36 100.0 30 .................................... TAATTATTTAAATCATCTTTCCTATTTCCA 33246 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAGGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTTGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGGGT # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTCTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTATATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTGGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCTCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAACATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //