Array 1 420118-420999 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKJ01000001.1 Salmonella sp. S108-09120 NODE_1_length_442902_cov_216.844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 420118 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 420179 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 420240 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 420301 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 420362 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 420423 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 420484 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 420545 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 420606 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 420667 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 420728 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 420789 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 420850 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 420911 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 420972 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 430407-431657 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKJ01000001.1 Salmonella sp. S108-09120 NODE_1_length_442902_cov_216.844, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 430407 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 430468 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 430529 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 430590 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 430651 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 430712 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 430773 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 430834 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 430895 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 430956 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 431017 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 431078 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 431140 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 431201 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 431262 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 431323 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 431384 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 431445 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 431506 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 431567 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 431628 29 93.1 0 A...........T................ | A [431654] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //