Array 1 875401-869848 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033191.1 Xanthomonas oryzae pv. oryzae strain PXO364 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 875400 31 100.0 35 ............................... TGAAGGTCTGACCCCTGTGGGTTGATCCCTGATCC 875334 31 100.0 34 ............................... TTTCATCCGCTGCTTGTACAGCGCTACAACAGCA 875269 31 100.0 34 ............................... AGCCGCTGCCTGAGTGGCAGGGCTCTGTGCCAGG 875204 31 100.0 35 ............................... TTCAACAATTTTGTGAACTCGTTCAGCAAGTACCT 875138 31 100.0 37 ............................... AGTGGCAGAGTATATGCAGACATCCCGCCAGATTCGG 875070 31 100.0 37 ............................... CAGGCATCGGTCGGTCGCTGGAATGACAGTGGTGCCC 875002 31 100.0 35 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 874936 31 100.0 34 ............................... ATCTACAAGGTCCGGAAGGAAAAGAAGAGGATTA 874871 31 100.0 35 ............................... TTGGATGGTCAGCCACCAGCTGTCCTGCGGGACCC 874805 31 100.0 34 ............................... ATGATCAGTCTTCGTCTTAAGCCCAAACGGGACA 874740 31 100.0 35 ............................... ATCGTGTGCGCAATGACATGCGTGGTGTCAGTCTT 874674 31 100.0 34 ............................... GCAGATGCTGGACCTGCATGAGCAAGGCAAGCTG 874609 31 100.0 35 ............................... TTCGTCGTTGTGCTGCTAAAGGTCAGCTGCACCCC 874543 31 100.0 35 ............................... TTAACAATGTACCTGTCATCGCCATCACCGTGGAC 874477 31 100.0 36 ............................... CGCAGGAGGCACTGCCATTGCAACGGGGACTGGCTC 874410 31 100.0 35 ............................... CAGTGTACAGCTGAAGCTTTAGGGTCGTGTGCGTC 874344 31 100.0 35 ............................... TAGACAACCATCCCCGCCTCTGGCCTAGCCATGCA 874278 31 100.0 34 ............................... CGCCGGCACATGGGCGATGGTGAGCCATGAGGTG 874213 31 100.0 33 ............................... TCAAAGGGGATGCCACTCAAAGACCAGCAGGCC 874149 31 100.0 34 ............................... CAGTCGCAACAGATGGATTAGCTGCCGTGATGGC 874084 31 100.0 35 ............................... CGCCCCCAGCTACCAGACATGCTGACGCCACTGAG 874018 31 100.0 35 ............................... TGTCGTGAAATTTGAAAAGGTGCCACCTGGGCCAC 873952 31 100.0 34 ............................... TCAAATACAAGCGCACCTGTTGGGCCAAATACTC 873887 31 100.0 35 ............................... TTCTCTACACGCGCCTCGACCTTGTCGTAGTCCTG 873821 31 100.0 35 ............................... GGGGTCGTCAGTGCACCAGCAGAGCCAGCAGCATC 873755 31 100.0 37 ............................... ACTGGCGACTCAAGCACTTGCAGGAGAGCATGCGCCC 873687 31 100.0 34 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATGT 873622 31 100.0 34 ............................... AAGCCAGCCGCCGACAGTGTAAGGGCAGACCCAC 873557 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 873492 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 873427 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 873363 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 873297 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 873232 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 873165 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 873100 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 873032 31 96.8 35 ...................T........... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 872966 31 100.0 35 ............................... AGGCTGTCGGTGACATTGGCCAGGGTGGCTTCCAG 872900 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 872836 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 872771 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 872704 31 100.0 35 ............................... TCGCTCACGGACACGGAGTCATTAAACGTCATAAA 872638 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 872572 31 100.0 37 ............................... TGTCAATGTGATGCTGTAACAGGTCCGCCCTTAGCCG 872504 31 100.0 35 ............................... AACACAGTTAGGCACATATGCCAGTATCTTGACCA 872438 31 100.0 34 ............................... ATGACGGCCAACAAGGTGCGTCGCCCGGACGGCG 872373 31 100.0 34 ............................... CGGTCACGACCACGAGCCCTGGGCGTTTTTCGCA 872308 31 100.0 35 ............................... GATGCGCGCCTCTGGAACGAGGTCCTACCCCGCTG 872242 31 100.0 35 ............................... TCTCACGGCCACTGCCGACTCGTATGTCATGGTCC 872176 31 100.0 34 ............................... CATTGGTGCCTGCCTGTGCCAGTATGTATGCATG 872111 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCCCGGGCACGTGTGGA 872045 31 100.0 35 ............................... AAGCAATGGCGCTCGGCCAGCCTCTACAGATCCGC 871979 31 100.0 34 ............................... GTCGCCGGGTACCAAGCGGCAAACCTCACACCAC 871914 31 100.0 34 ............................... GCCACCCCGACGGCCATCACACCGTCAAGGGAAA 871849 31 100.0 35 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAG 871783 31 100.0 36 ............................... TTGACAGATGATCAGTATGACAGCTTTGCCAAGAAG 871716 31 100.0 34 ............................... GTGAAATACTCGCTCGCAATCGACTTGATGAGCG 871651 31 100.0 35 ............................... CGCTACGATCCGGCATACGGGACGTAGGGTTGCAC 871585 31 100.0 36 ............................... ATCACGCGGACGAACAAGCCCTCATCGCGCGATCCG 871518 31 100.0 36 ............................... TCCCTCTGTTTGTTAATGTTCTCAACCTCTCTGGAA 871451 31 100.0 33 ............................... CAGCCCCGGCGTCGGCGGCCGCGTCGAACTCCT 871387 31 100.0 34 ............................... CTGGGGGATGTTGAGCATAAGACCAGCAAGGCTG 871322 31 100.0 35 ............................... GGGCATGACTAAACTCCTCGTTGGCGTTACGGAAA 871256 31 100.0 36 ............................... TTGTAAAGCTCAGACATGGGGGCACCCTCTCCGCCT 871189 31 100.0 35 ............................... CGACCTCTTTGAGAGTGTGTCACTGTACATCTGCA 871123 31 100.0 36 ............................... GTCGTGCAAGGCCCGCTGATCCAAGCCTGGCAGCGC 871056 31 100.0 35 ............................... TTCGGCGTGCCGCCATCAATGATTGGGCACAGCAG 870990 31 100.0 33 ............................... TGGCAAACGGTGGTAACTCGTCTGCTATTAGAC 870926 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 870861 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 870796 31 100.0 34 ............................... GCGCGGAGTATCGGCGCAGTACACACCGCTCCCG 870731 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 870665 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 870599 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 870534 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 870469 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 870403 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 870337 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 870273 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 870206 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 870141 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 870075 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 870010 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 869943 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 869878 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 85 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //