Array 1 106603-107430 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POXZ01000001.1 Neisseria cinerea strain C2014013859 C2014013859_S42_ctg_581, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    106603	    36	  97.2	    30	......A.............................	AAATCCGCCCATAGAGCGGACAAGCTGATA	
    106669	    36	 100.0	    30	....................................	CATTCCAACTAACTTCTGCGCTAGTTGCTA	
    106735	    36	 100.0	    30	....................................	TTGTTTCGTGTGGCGACAACGACTGCGCAT	
    106801	    36	 100.0	    30	....................................	CAATGCGGGCAAGCAAGCGATTAATAATCT	
    106867	    36	 100.0	    30	....................................	CTGTCCATGTGTTTATATTACATCAACAAA	
    106933	    36	 100.0	    30	....................................	TGGCTTGCTTTCGGGCTTTTCGGGTAAAGT	
    106999	    36	 100.0	    30	....................................	GCTGTTTAGTTTGCTTGCGGTGCGCTATAA	
    107065	    36	 100.0	    30	....................................	CAAATCTTGAACGATAAACCGCTCTTCGTA	
    107131	    36	 100.0	    30	....................................	CAAGGCCTATAGACATAGCCCTGTCCCATA	
    107197	    36	 100.0	    30	....................................	TTCGTTTATCCGAACAATCCGGGATTTTTC	
    107263	    36	 100.0	    30	....................................	AAGGTTTTCGGCTGCGGACATACGCCGTTA	
    107329	    36	 100.0	    30	....................................	TGCTGTCGCCAACTTGCGCATCAGTACCAA	
    107395	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   GAACGGGGCAGCGATTGCAAACGCAGGGAAGAACGCGACATGGCAGGACTGTCCGAACGTATGGCGGCAGAGTTAGACAGGCACGGGGCCGCCGTATTTTTCCGGGAATATCCGAATGCCAACCACGGCAATGTCCCGTTTCACTCGCTGACCGACTGCGTCGAATATTTGAGGAAGGCTTGGCAGAGGTAGGGAATCAGGGGTGGGCATAAAAGGCTTATCGCAAGATTGGAAGCCAAGAAGACCAAAAAAGCCGTCATCGCCGCATTGATGCGTAGGCTTGTCGGTACGTACCACATAGACAAGAAAATCGAAGATGACAGCTTATCGCGTTATAAACCAGCGTAAATCCCGATAAGAAAAAAACATTTCTTTTGAAACGCCCGCCTTGCCGTGTGTAAAATACTTTCAATTGTAAGGATTATGTTATCGATCAAAGGAGTATCTTTTCCATTTTGCAGTGCGACAATCGAGCTTGTAAAGAGGCAGAAGCCGACAGA
# Right flank :  TCTCCCAACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGCCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGATTACGCCGGCTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAAGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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