Array 1 522347-522821 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================ ================== 522347 33 90.9 40 T.A.........A.................... ACGCCATAGTCCCGCAGGCCCCAATAGGGAGGCGACGTTG 522420 33 93.9 40 ............AC................... GAGGCCGTCGACCGGATCGCTCGCAAGTACGACCGCGTTG 522493 33 90.9 36 ....T.......A...........T........ ACCCCCTGTCTGTGAGCCGCCACACCCACCTGTGGT 522564 33 100.0 40 ................................. TAGACGATGTGGCACCCGGCCCAGGCCACGTACCCCGATT 522638 33 90.9 41 .........GC.C.................... CGAAACTCGTCGATGACGCCCGCCTGCATATCACCCTGTTG 522712 33 97.0 44 .............C................... GGCTGGGTGTCTGACCCGTCGAAGATCAAGCAAAAGATCGAATC 522789 33 75.8 0 .T...T..C.C..GG........G.....T... | ========== ====== ====== ====== ================================= ============================================ ================== 7 33 91.3 40 CATCCACGGTGAGTACCGTGGCTACGTTGCAGG # Left flank : TGACCACACCCTCTTGCACCATCATGTACCACATACCCGCCTAGCACGATGAAAGTGGAGACGGTCGCCAGCCGCCTCAGGGTTGAGAGCTCGGTAGCCCTACCATTCGACAACGATTTAGTAAGCGAGCTTCGCGAGTGCGGCACCCGGTGTGGGTGCCACTCTCGTTGTTCGGACGCCGTCAGGGCGGGTATGGTCCTCCGGTCCGCAAGGCTGCGCCTACAGTGTACGCCGGCCACCCGGTCCAGCGCCCCGTTGTGCCGGACGCCTGATAACCAAGGTTTCTGCGATCAGGTCATGAAGCGCTTGCCTGCGCCTCGTGAAGGCAGACAGGCGGTAACCGAGTCCAAAGGTCAGCGCCATGAAGACAAACTCAGCCATGAAACGTCCCGTTGCCCGCGCAAACGATACCCACCGGCCGTTAACGTCGGTCACCATGATGTCCACGGTCCCCAACCAAGAGTGGCTTGGTGCGGAGAACTGATCTGCAAGTCGAAATA # Right flank : GCAATCGGGGCAGCAAGCCTTCAAGTCCTAAAAGCACGCCCCCGACAACCGGTGACGTCCTAAACTGTCTGTAAACGCGAAGCGGTCTGGGCTACCATCGGTGGCGTCGGAAAACTCGCCCCAGCTGGGGCACACCGAGGAGGACCCAGACCTATGTCCAGGATACCACCCAGCCAGCAGTTGGCGGAGCTGGCCCGGCAGCTGGCCGCGCAGGCCCGGGAGGGTACGGAGGTCGAGGACCTGACCCATGCCCTCGTCCGCCTGGGCGCCCGCAAGCTCATCCAGGAGCTGCTGGAGGCAGAGGTCACGGAGCTTTTGGGGCGCGGACGCTACGAGCGGCGCGAGCCTGGCCAGGAAGGCGCCCGCAACGGCTACAAGCCGCGGACGCTGCGTTGCGCCGAGGGGCGGCTCGAGATCGACGTCCCCCAGGTGCGGGGCATGGAGGGACTGTGCCAGCCCACGCTGTGGAGGGCCCTCAAGCGGCGGACGGACGTGCTGGA # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATCCACGGTGAGTACCGTGGCTACGTTGCAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1833263-1832129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1833262 36 97.2 36 ..........C......................... CTCCAGCCGCCGGCGGGCCATGTCGCAGTAGTCACG 1833190 36 97.2 37 ..........C......................... CATCAGCCGCAGCTTCAGCGTGGTTTCGCTGTTGCAG 1833117 36 97.2 36 ..........C......................... CTCCGTGCTGGCCGTCGACAGCAACGACCCGGCCAT 1833045 36 100.0 38 .................................... CGCCGCCCGGGCTCGCTACGACGGCGTGGACCTGGGCT 1832971 36 100.0 38 .................................... CCACTGCTGCGACGGCGCGTCCCATCCCTCGACCACGG 1832897 36 100.0 39 .................................... CCGTGAACTGCACCGGCGGGTCGGTCTCCCTGTACGGGC 1832822 36 100.0 36 .................................... CCCCTGGCCACATGTGCGGGTGCCCAAGGATCCCTT 1832750 36 100.0 38 .................................... TGCCGAGCCACGAGCCGGCCATGCCGCCGAGAATGCTA 1832676 36 100.0 37 .................................... CTCACGATGAACATCTACGAGGCCATCGAAGCCGCCA 1832603 36 100.0 37 .................................... CAGCGTCCGCATAACCATCTTGGTGTTGCCGTCGAGA 1832530 36 100.0 38 .................................... CATCTCCTCCTTTTTCTCGGCCGGTCACCGACCCGGCC 1832456 36 100.0 40 .................................... GGCCCTCGCCAAGCGTCTCCGTGACCGCATCCTGGAGAAC 1832380 36 100.0 35 .................................... GGCGGTGCTGGTGGCATTGTTGGCATGGGCGGATG 1832309 36 100.0 38 .................................... GATCCGCCGCCACCATCGGCACCACCTGCCTCCGCAGG 1832235 36 100.0 35 .................................... CCGGTTCCCCAATTCATGGTTGGCGATGGTGCCGG 1832164 36 88.9 0 ..........C......A...........A...A.. | ========== ====== ====== ====== ==================================== ======================================== ================== 16 36 98.8 37 GTTGCATCCATGGTGAACACCGTGGCTACGTTGCAG # Left flank : TTCCGCGTGGCCGGGTTCGACCGGGACGGCACGGCCTTGTACTGGCCCGTATGGCGCGAGCCGATCGCGCTCGATACGCTTCGCTCCCTGATCGCCTTGGGGGTGCACGGGGGAAGGCAGGCAGCAAAACGCCTTCGAGACAGCGGGGCAGTGGAGGTGTTTCGCTCGGCCCGGGAGGCAACCACCGGGCACGGTTATTTCACCTTACGTCCAGCGACGTTGTGGACGAGGCGGGATGAGGAGGCCGCCACGGACGTGCAAGCGGTGTGAGGCGATCTCCTGGCGGTGTCTCCGCCCTGGGCCGTCCGTCCGGCGGTCCGCGCGCGAACCTCAAGTGGACATCAAGTCCCTGGGGGGTTCGCGCTGTGGCGCAAACCGCATGGATGCTGGGTTCCTTGACAGCCGGTCCGGGCAATCGACGCCCCGAGCCCACCGCGCAGCCGCGGTTCGCGCACGAGGGTTGGGAAAGCCTTGTGGGAAGCAAGCTGGTAGGGTGAACC # Right flank : GATCATCAGTCAGCAGGCGGAGAGTCGCTCGGCTTAGCCGCCCTCGACCCGGGATTTGGCGTCTGCTTCACGCCGATGCACCGCGTCATCGAGGATCTCCGCAACTACTTCGCAGTGCGGGCGACCGGCAACAGGATGAGTGAAACAAAAGGAGCATGAACACCCCCACTGGAGAGCGTTGGCTGGGAATTCCTCTCGTTGGGCAACCTAAGCCGCAGCGGCCCACCTAGCGCTTGTAGACGTCGCCGCGCGGGCCGATGGTCGTCACGATGAACAGCTTGCGCTCCCGGTCGGGGATGAACAGGATGCGGCGCCCGCCCACGCGCAGCTTCCACTCCGGGCGACCGGCCAGCGGCTCGGGGCGAGCCTGTTCGGGGTTCTCCTGCAGCCGCTCCAGCGCTCGCAGGATGCGCTCCTGCTCGGGCCGTGGCAGGCGCTTCAGATAGCGCTCGGCGGGGCGCAGGAGGATGACGCGCCACTCACTCACGGCTCGCCTCGAG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCATGGTGAACACCGTGGCTACGTTGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 2719348-2717496 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2719347 37 89.2 37 ACGT................................. GCTGAGGGAATGACGGGCTCGCGGGAGCGAGAGAAGT 2719273 37 100.0 35 ..................................... GTCTTGATCGCCGTGGCCCACCAGCTTGACCAGGT 2719201 37 100.0 35 ..................................... CGCTGCCCCATCGTGTTCAACGCCAAGGGCTTCGG 2719129 37 100.0 35 ..................................... GGGGTGGGGAGGGCATGATCCGCAAGCGTGGCAAG 2719057 37 100.0 34 ..................................... CTGGTCCGCAACATTCCGCGGGCAGGAGGCGCTG 2718986 37 100.0 38 ..................................... AGGTAGTGCCGCAAGGGCTTCAGCCGCTTCTCGCGGGC 2718911 37 100.0 36 ..................................... TTGGAGCGGCAGGGGGCATGAGCCATGGAGGTCCTA 2718838 37 100.0 35 ..................................... GCCCGTCACCCTCTACACCTACGAGTCCAATGCGC 2718766 37 100.0 34 ..................................... CGCTTACCCTGCTGCCCTTTGCCGGGTCCCGGAC 2718695 37 100.0 35 ..................................... AAGCACCACGTGGCCTACAGCCGCGAGGTCTGGGA 2718623 37 100.0 35 ..................................... ACCAGCATACTAGCACATCCGCCACTGCGCCAGCA 2718551 37 100.0 37 ..................................... GCGAGGGCCGCCGCGCCACTCGAGACCCACGCGGCGA 2718477 37 100.0 37 ..................................... TGGCGGGTCGAGAACGGTCGATTGATCGAGATCGATT 2718403 37 100.0 34 ..................................... AGCAGGACCGCCACGTCCGGGCCGCTGGGAGGAA 2718332 37 100.0 34 ..................................... TCGGGACGGTGAGCCTGACGACATGAGCGGCTAC 2718261 37 100.0 35 ..................................... GTAAGCGGGCCCGCGACGTCGGCCGCCCCCGTAAC 2718189 37 100.0 35 ..................................... TTCCGAACTGGCAGCCTGAAACAGGACCGTCTCGG 2718117 37 100.0 36 ..................................... CAAATGGGGCTGCCCGGGCAACACAATGCGCGCGAC 2718044 37 100.0 34 ..................................... GCTCAGAATTCGCCACAACCGCTCCACCTCGGCC 2717973 37 100.0 37 ..................................... GGCATCGGCGGCCAAAGGTACTCCATCGGCACCGCGA 2717899 37 100.0 36 ..................................... CCGAGGAACGCGCCCGGGTGATCTTGGGGGCTGGGG 2717826 37 97.3 37 ...G................................. CCGCGCGGCCGTGTGCGCACCGGGTTCCTGCCGGGCC 2717752 37 97.3 35 .........................A........... TCGGCCGTCGCCTCGGGCTGGCTGCGATACGGCGG 2717680 37 100.0 35 ..................................... TGGATGGCCTGCTCGATCTCGGGCGTCGTCAGGGG 2717608 37 100.0 39 ..................................... GCGGCCCAGGGGCCGGAAAATAATAAACGACGCCCTGTC 2717532 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 99.4 36 GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Left flank : CGCATCCTCGATGTCCCGGCTAGAGAGGCCCCGGGCGTACATCTCCACCACCAGGCGCTCCAGCACGTCCGTCCGCCGCTTGAGGGCCCTCCACAGCGTGGGCTGGCACAGTCCCTCCATGCCCCGCACCTGGGGGACGTCGATCTCGAGCCGCCCCTCGGCGCAACGCAGCGTCCGCGGCTTGTAGCCGTTGCGGGCGCCTTCCTGGCCAGGCTCGCGCCGCTCGTAGCGTCCGCGCCCCAAAAGCTCCGTGACCTCTGCCTCCAGCAGCTCCTGGATGAGCTTGCGGGCGCCCAGGCGGACGAGGGCATGGGTCAGGTCCTCGACCTCAGTACCCTCCCGGGCCTGCGCGGCCAGCTGCCGGGCCAGCTCCGCCAACTGCTGGCTGGGTGGTATCCTGGACATAGGTCTGGGTCCTCCTCGGTGTGCCCCAGCTGGGGCGAGTTTTCCGACGCCACCGATGGTAGCCCAGACCGCTTCGCGTTTACAGACAGTTTAGG # Right flank : TTGCCGCCCGTGGCCGCCTCGACATGGACCGTTTTTGGTCCCGTGCGCGAATTCTTGCACCTGGCGACAGGCTTGGTGCCGCCGGCTGACGGTAGGTTGCCAGCATCCCGGCCTCGCCTTGCCCTGGCCCGGGCGCTGTGTGAGGATTGAAACGGGCGGGCTCGTGGTTGTGGTGCGCAGGCGGTGCCAAGGCTCCGGCACCGCCCGAGGGGCACCGCCGATCGTGAGGAGGGCAGGGCCATCGTACCAGGGGGTCGTGCCGCACCCGCGGCCCCCATCACAGGGTGCATCGCAAAACGCTGTAACGCCGCCGGTGCTCATGCGCCGCACCCACGGTCCCTATCGGAGGCGCAGCACGGCATGGACACGCCAAACGGCCAAGACACGCCGACGAAGAACCTGCGCGACCACGTGATCCTCCTGGTCCGGCGCCTGCGGGCCATGGGGCTCCCCACCAGCCCGGCTGACGCCGTGAACGCGCTGGCAGCTCTGGAGCACGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2721650-2720818 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2721649 37 100.0 39 ..................................... GTGGAGCAGGCCCGTCTCACCATCACGATGGCCTGGAGT 2721573 37 100.0 34 ..................................... TTCGCGCAAATCTCCGAGAACGGTCGGCGCCAAG 2721502 37 100.0 35 ..................................... TCCTCGGCTGGGATCGGGTCGCCGGCGTGGATCAC 2721430 37 100.0 34 ..................................... GTATCGCCGTGGTCGCCGACGGTCAGGTGCGGGT 2721359 37 100.0 35 ..................................... TTGCCCTTGCGGGCCGTCGAACCGGCCATCTGCGT 2721287 37 100.0 34 ..................................... AGCTCCAGGGCCGCATTTTCCGCCATCACCTTAC 2721216 37 100.0 35 ..................................... CGGACGGCAGCGAACGAGACGGTCCCCTCCAGCCG 2721144 37 100.0 36 ..................................... CCACTCCAGCGGGTCGTAGGACAGCGCCCGTAGATC 2721071 37 100.0 36 ..................................... GAGGCCATGGACACGGCCCCGGGGCTCAAGGAGTGG 2720998 37 100.0 35 ..................................... CCGGGGCCGCCCCTCAAAGTAGTACCGCTCCACCA 2720926 37 100.0 35 ..................................... AGGATGTCGCCATACGCTTCCTCCACATACACCCT 2720854 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 100.0 35 GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Left flank : GGCTGCGTCTCGAACCGGACCGTGCCAGGGATGGATCGGGGGCGACGCAGGGGCCGGACGAACTCCTTGAGGATGGTGTAGCCCCCCTCGTAACCCTGGGTCCGCAGCTCGCGGAGAAGGACGACGCAGTTTTCCACACCTTCCGCGACCCGTTGCAGGATAAACTCTTTGTACGGGTCGAGCTTCGAGCCGCGAGCCGCCCGAGGTGCCGGCTTGGGCACCTCGGTGGCGCGCAAGTACCGCCGCACCGTGTTCCGGGAGATGCCGAGGATTCGCGCGATCTCCCGGATGGACCGACCCTCGCCATGAAGCTCGTATAAGCGTTTCACCTTCCCACCTCCCAGCATGTTGCCGAGGACACCTCCCGCTCCGTGGCTGGATTCGGAAGGTGTCTTTGCTGGGGGGTGGGTCAGTTCTTACCCGGCGATCCCGGGTCAGTTTAACACCGGCGATGACATTGAAACCCGGGCCAGCATCCCCCAATAGTACCCCTCGCTGTG # Right flank : TCGCCCTTGACGCGCCACCGGGATAATTGCGCCAGGTCACACCCGGCCGAAAGGTCAAGTCCCGAACTGTCTGTAAAAGCGGTCTGGGTCATGCCACGGTGGCAGCGGGTGAAACCTCTTTCTGCGCCGCTCTTTGCCGTTGCCGCTCCTCGATGTAGCGCTCCAGCTGCTTTCGTTCGTGCTCGCTGAACTGCACCCGCCGCCAGCGCTCACTCGCCCGCCACAGCACGGCGAAGACTAGCTTCAGGCACTCCCGCTCGCTCCGAAACCGCGGGATCACCTTGGCGCGCCGCCGCTCCTCCTCGAAGCTGCGCTCCACCAGGTTGGTGGTCCGGACATGCTTGCGGTGGGCGGCGGGTAGCCGCAGGTGCGCCAGGCTCGCTTCCAGGTCCTCCTGCAGGCTCCGCATGGCCGAGGGATACTCCCGCCCGAACCGCTCCACCACCTCGGCCACCAGCCGCCGGCCCTGCTCGATATCCGGTGCGTCCCGGATCGCCTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2724160-2723906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2724159 37 100.0 35 ..................................... TGGCGTTGTCGGCCATGGGGCTCTACAGCGGCGGC 2724087 37 97.3 36 ....................T................ TTAGTGGGAGGGATGGGATTGGACCGGAAATGCGGG 2724014 37 100.0 35 ..................................... CCTGACCGGTCGGGTCCTCTACAGTTTCGAGTTCC 2723942 37 91.9 0 ..................................TGT | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 36 GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Left flank : GCCCAGCCGGACCGTGCCTCGGCTCGGCAGCAGCTGGAGCAGGTGGCGGCAAACTTGGAGCGGCGGTTCCCCCAGGTGGCGAGCCTGCTGCGGGAGGCCGCGGAGGAGGTTTTGGCCTACATGGACTTCCCGCCGGAGCACTGGCGGGGGATCCACTCGACGAACGTCCTGGAGCGGCTGAACCGCGAGCTGGCGCGGCGGTGCGACGTGGTGGGCATCTTCCCGAACGTGGCGGCGGTGCTGCGCCTGCTGGGTGCGCTGCTGGAGGAGCAGCAGGACGAGTGGCTGGTGCAGCGGCGGTACTTTAGCCAGGCGTCGATGGCGAAGCTCAAGGGCGGTGACGCGTTGGGGAGTGACTCGGTAAGCGCCTTGGCTGTTGCAGCGAGGTAAGCCCATGGAACCCGAGGGGGAGCCGCTTTTCCACCACTTGCCGGGACACGGCCAGGCCGGGTGAGGATTGAAACGTTCCTCGGCTACTTCTTTGGACAAGAGCTGTGGGC # Right flank : CAACGCCGACCTAGAAGTGACCCACTTGGCGCCGGTTGGAAACTGACCCACCCCTTTGGGTCACTTACTCCGCAGAGCCGTCCTGTGGCATCACCTCCCTTCGGGGTGGGGTCCCGCCGAACAGTCCTGCCCGCTTCTTCTCCCGAAGCCGGTAGCTCTCGCCCCGGATGTTGATGACGTGGCTGTGGTGAAGCAACCGGTCGAGGATGGCGGTGGCGATCACCGAATCACCCAACACTTCGCCCCACTCGGCAAAGCCCTTGTTACTGGTCAAGATGATGCTGCCCCGTTCATAACGGGCCGAGATCAAGGCGAACAGGGCGGTCGCCGCAGCCCGGTCGTAGGGCCAGACCCCGAATTCGTCGATGATCAGCACCTTGGGGGCCAGGTAGACTCGCATGCGCCGGTCGAGTCGGTGCTCGGCTTGGGCGCGGCGCAGGTCTTCGAGCAGCTCGTGAGCCCGCACGAAGTACACCCCATAGCCGGCCTCGATCGCCTTG # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2730814-2725618 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2730813 37 100.0 35 ..................................... ACTTTGGGAAACGCCGCTCTGTGGCCAAATTAGGG 2730741 37 100.0 36 ..................................... ATCGTCTTGCGGTTGGCGTGCCGCCGTCTCCTGCCG 2730668 37 100.0 38 ..................................... ACCTCATCACCGGCTCGCTGTACCCTACGGGGCAGGTC 2730593 37 100.0 36 ..................................... TCGTCCACCATGTACACGTCACCCTCAGCCGGGGGC 2730520 37 100.0 35 ..................................... AGCCACCATTGTTTCGTCTGACATGCAACGCTCGA 2730448 37 100.0 37 ..................................... TTCAGTCTCTCGAACGTGTCCGCGTCGGGATCGTCCG 2730374 37 100.0 35 ..................................... CTGACCCATTCGGCCACCTTGCCCACAAGCTCAAT 2730302 37 100.0 36 ..................................... ACCGATGGCCACGACGCGATACTCATAGGCCACGCC 2730229 37 100.0 36 ..................................... TCCACCGCCCTAGGCTTGTCCAGAAACCGCACCGAC 2730156 37 100.0 35 ..................................... AGCCACGCCCAGCCACGGTGAGCCACGGCGGTGGA 2730084 37 100.0 36 ..................................... GAGTTCGACGATCGCATCAAACTTACCGACGAAGAG 2730011 37 100.0 37 ..................................... CCTGCCGTGCCGGGGGCATCGGTCAAAGGGCCGGTGC 2729937 37 100.0 35 ..................................... TTGGCGTCTTGTTGGGCCCAACGAACGAGCCGCTG 2729865 37 100.0 35 ..................................... TCCACCAACGAAGAGTACGATCCCGCAACCAACAC 2729793 37 100.0 35 ..................................... CGCCCCCCGCACAGCGACCGTGGAAGGGGGTGGTC 2729721 37 100.0 35 ..................................... CGCGCCGCACGTAGGGTGGGTATCGTCGGCCCTTT 2729649 37 100.0 36 ..................................... GCATCGAGGCCAAGTACGAGGGCGTCCGGGGTAACA 2729576 37 100.0 35 ..................................... CCGGACCCCGCCCCCGCGATGACGACGCATGGGCC 2729504 37 100.0 36 ..................................... AACCGCTGCTGGTACGCGACGGGCCGAATGTCGGGC 2729431 37 100.0 36 ..................................... GCGATTCGCGACATTCGGCCCGCCGTCTGCGAGCGG 2729358 37 100.0 34 ..................................... GCAAGGCCCTCTACATGACCGTGGACGAGGTCAA 2729287 37 100.0 37 ..................................... CGCCATCGCGGCCGCGGCGGCCAGAAGCCCCTGTGCC 2729213 37 100.0 37 ..................................... ACCCGGCGGGAGATCGAGAGCGGCGAGTACGCGCCGC 2729139 37 100.0 34 ..................................... CTGGCGAACAGCACGGCCCGCATCAACATTGCCC 2729068 37 100.0 38 ..................................... CACAGCGTGAACTGCCGCGATGGGAATCAGGCCGCTGC 2728993 37 100.0 34 ..................................... CGAGCAGAAGCGCCGGGCAGCCCGGCACCTGCTC 2728922 37 100.0 36 ..................................... TGCAGGTTCTGGAGCGTGTACGCCCGGGCCGTCGTG 2728849 37 100.0 36 ..................................... CCCCTGGGCGTGTTCCTGCTGTCGTCGCCGGTGCGC 2728776 37 100.0 36 ..................................... CCCGCACGACGATCTGGAGCGCCGCCGTGTCATAGC 2728703 37 100.0 35 ..................................... ATCTCCTCCACCACCTGCCACGCGGCGGCGATGTC 2728631 37 100.0 34 ..................................... GCGTGATGCCAAACCCGGCGCGCATCGTCGAAGA 2728560 37 100.0 35 ..................................... TTGAGCGTAGACGCGTACGCGCGCACGCGCGCGCA 2728488 37 100.0 36 ..................................... CAGCACGCCCCGCTCGTACTTGCTCAGGGTGGCCGG 2728415 37 100.0 38 ..................................... CTCGCTCGGCAGGCCCGGGACGAACGGCGAGTCATACA 2728340 37 100.0 37 ..................................... TGAGCCGGACGGGCTTCGGTGGCATCGGCACCGTCGG 2728266 37 100.0 36 ..................................... TCCAGCGCCCCATCGATGTGCGCCAGCCAGTAGCGA 2728193 37 100.0 37 ..................................... CGGAGCAGGCTTGCATTGGTCCCCGTCTCCGACGCCA 2728119 37 100.0 36 ..................................... GCGAACCGCATCAAGGCCATTACGGGGGCGAGTAAT 2728046 37 100.0 39 ..................................... GCCCGCGCCGGCGCAGAATCAACCCGGCACGACTGTCGA 2727970 37 100.0 35 ..................................... GCGGCAGTGGGTGGAGGAGATGCGCGAGAAGTGGG 2727898 37 100.0 38 ..................................... ACCACCTCGTGCAGCTGCACCGACACCCGGGTCAGGTG 2727823 37 100.0 34 ..................................... GCGATTCGCGACATTCGGCCCGCCGTCTGCGAGC 2727752 37 100.0 37 ..................................... AAGTTATGGCTGTGGGGTAAGATCGCCTCGCTGATCG 2727678 37 100.0 36 ..................................... TCCATCGGCTTTGAGATCATTCGTTCGGACGTGCGG 2727605 37 100.0 35 ..................................... GCGATGGGATCGACATCCCGCCGGAAGCCGCGAGC 2727533 37 100.0 36 ..................................... ATCGCCCACGCCCGCGAGGACGTGCCCGCCCTTGTG 2727460 37 100.0 34 ..................................... CTCATCGCGCAGCCGCCGGATGACGTCCAGCCAG 2727389 37 100.0 37 ..................................... GCGTGGATGACCGCTTCAGTGAGCATCCCAAGCATGC 2727315 37 100.0 35 ..................................... CAATGACCGCCGGAACAAGTCACCCGCTCCGGCAG 2727243 37 100.0 36 ..................................... GCGAATGGTCTTGGCGAAGGCGCCCTTGACGATCAC 2727170 37 100.0 35 ..................................... GGCAGCTACAAGCTGCCCATCGCGGACGTGATCGA 2727098 37 100.0 35 ..................................... CTGCGGCGGGCGCGACGGCTGGCAAGAAAGGTGGA 2727026 37 100.0 37 ..................................... GCTTGGTCGTACTTCGCAATGTAGGCCTCCCACGTGT 2726952 37 100.0 35 ..................................... GCATACTACGTGAGGTTCGAACACCGCCCAGCCGT 2726880 37 100.0 35 ..................................... ATGCGCGAAGGCTATTGGGTCTTCCGGGGGGAGAA 2726808 37 100.0 35 ..................................... ATCCTGCGGGGGTTGGAATAGCGCAGGTCGCGTGA 2726736 37 100.0 34 ..................................... CCGGCCGGCACCCGCTCCCGGATCGTCTTGGCGA 2726665 37 100.0 34 ..................................... AACGACGGGCAACCGCTCGACCCAAGCCGGTGGA 2726594 37 100.0 34 ..................................... TACAGCCTGGAGCAGAGCCGGCGGCAGCTGGCGC 2726523 37 100.0 35 ..................................... TCCGACCAGCGAACCTTGATCTTCTGGCGGTTGCG 2726451 37 100.0 34 ..................................... ATGCCACCTCCGCAACCCCTCCTCCCACTCGGCC 2726380 37 100.0 34 ..................................... CCAGGTGGCTGGAGAACGACATGCAGGAGAAGGG 2726309 37 100.0 36 ..................................... TTCGGGCGCAACCAGATTAAGTCCCTGACCGAGGTG 2726236 37 100.0 35 ..................................... ATCGCCCATGCCCGCGAGGACGTGCCCGCCCTCGT 2726164 37 100.0 36 ..................................... TTGCGGGATACATCGTCTGGCACCACGCCATTGCGG 2726091 37 100.0 36 ..................................... ACCTGGCCGTACATGACCTGGCCCCGGCTTTGGACC 2726018 37 100.0 37 ..................................... AGCTCGATGCCCACGAACTTGCGCCCCAACTTCAGGG 2725944 37 100.0 38 ..................................... AGGTGGCCCTCCAGCACCTTCTGACGGATCGCCTGGGC 2725869 37 97.3 35 .....................A............... CTCCTCGCCCGGCCCGTTCAGACCCTGCTCGGCCC 2725797 37 100.0 34 ..................................... CCGCCATGCGGTAGAGGTACAGCAGCACGATGCG 2725726 37 100.0 34 ..................................... AGGTCGCCCGTGTAATGCACGATACCCTTGGCCT 2725655 37 73.0 0 .........................T.AAG.CCCGGG | G [2725621] ========== ====== ====== ====== ===================================== ======================================= ================== 72 37 99.6 36 GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Left flank : CAAGCACGCCCAGTCCATGGTGGCAGCGCTGGTACGGACCATCTTCGCCCAGCCGGACCGTGCCTCGGCTCGGCAGCAGCTGGAGCAGGTGGCGGCAAACTTGGAGCGGCGGTTCCCCCAGGTGGCGAGCCTGCTGCGGGAGGCCGCGGAGGAGGTTTTGGCCTACATGGACTTCCCGCCGGAGCACTGGCGGGGGATCCACTCGACGAACGTCCTGGAGCGGCTGAACCGCGAGCTGGCGCGGCGGTGCGACGTGGTGGGCATCTTCCCGAACGTGGCGGCGGTGCTGCGCCTGCTGGGTGCGCTGCTGGAGGAGCAGCAGGACGAGTGGCTGGTGCAGCGGCGGTACTTTAGCCAGGCGTCGATGGCGAAGCTCAAGGGCGGTGACGCGTTGGGGAGTGACTCGGTGAGCGCCTTGGCTGTTGCAGCGAGGTAAGCCCATGGAACCCGAGGGGGAGCCGCTTTTCCACCACTTGCCGGGACACGGCCGCGCTTTCGGC # Right flank : TAGTGGTGGACTTTCCGGCCAGGGTTTAGGCGTGGCTGGTGGCCGTTGACAGCAGCGGTCACCGGCGGCTTCCCTTCGGGTTGGACAAACCCGAGCACGAAGGGAGGTCGGACCACCGGTGACCGCTGACTTCAGGATGGCACTTCTCGAACTGCTGCGCCAGTACCAGGGCGAGCCCGAGGTCGACGCCCTGCGGGAGGGCCTGCGCTGGCTCGCCCAGCAGCTGATGGAGGTCGAGGTCAGCGAACTCATCGGCGCCCAGCGCTACGAGCGCACCCCGTCGCGCACTACCTACCGAAACGGGTACCGCCCCCGGCGCTGGGACACGCGCGTGGGCACCATCGAGCTGCAGATCCCGAAGTTACGCCGCGGCAGCTACTTCCCCAGCCTCTTGAAGCCGCGGCGGCGCGCGGAGCGGGCCTTGCTGGCCGTGGTGCAGGAGGCCTACGTGCACGGGGTGAGCACGCGCAAGGTGGACGAGCTGGTCCAGGCGCTGGGCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2733247-2732273 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP037895.1 Thermaerobacter sp. FW80 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2733246 37 100.0 38 ..................................... TCTCGTCGCCGGGTTCCGAGCCGTCCTCGGCCACGGGC 2733171 37 100.0 35 ..................................... TTGCCGAACCCTGTATGTGTCACCTGGGCCTTGCC 2733099 37 100.0 36 ..................................... CCGTTGGCATCCACAAGAATGGCCTTGGTGTTGTAG 2733026 37 100.0 35 ..................................... CGGTGGACGCTTGCGAGCACGTCGCATAGCGCGGC 2732954 37 100.0 33 ..................................... CTGCGGCTGGCCGTGATCCGGGACCGGCGGGAG 2732884 37 100.0 35 ..................................... ACCACCACCCCCAGGATCGTGAGCTCTCTCCGCCG 2732812 37 100.0 35 ..................................... CGAGAGCACCGGGCGCAGGCCGTCGCGGAAGCCGC 2732740 37 100.0 34 ..................................... TGGCTCATACCCACACCCCCTCCGTGATGGTACA 2732669 37 100.0 36 ..................................... GGGAGTTAGAACGAAAGTTGCGCGACGACTATTACC 2732596 37 100.0 35 ..................................... ACGGACACTACCGAGGATTGCACGCTATACGGCGC 2732524 37 100.0 34 ..................................... GCAATCCCGTCCCCGTTGCTGTCGGTGTCCAGGA 2732453 37 100.0 36 ..................................... CTCACGAGGCCTCACCCCGCGCCTTGCGCCAAGCCG 2732380 37 100.0 34 ..................................... AGGACCGTGGTCGGCATAACGGCACCAATGTCGC 2732309 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 100.0 35 GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Left flank : TGAACACAGAAACGAAAGAGGGACAACGGCGGTTGCGACGTGTGGCCCGCGTTTGTACCGGCTTTGGGCAAAGGGTCCAGAAATCCCTCTTTGAATGTCGCGTAACACAGGCCCAGTTGGAAGAACTCGAGGCAAGGCTGGTGAAGATCATCGATGGGAAGAAGGACAGCCTGCGCATTTACATTCTACCGGGGGATCGGAACCGCCTCGTAAGGGTTCACGGAATCGACCGCTACATCGATTTCGAGGATCCGCTCATTGTATAGCCATGCGGAGATCCCCGGGGCAAACAGAGTCTGGTCACCGTGGCCATGATGGGGTGCGCGAACCCCCAGTGATCACGGAAACCCCGGGAGGTTCGCGGGGCGCGAAAAGCCTTATGAAACAAGGGTTTGTGACGCGATGGTTGAGGATGGGCGCTTCCGATACAGAGATTTCAGACGGGGTTCGCGCAATTGGGTCGAGGAGTTCAAGCGCGATGGGCCTTTTCCCCCCGCGCC # Right flank : GCACTCTTCGTCGGCGGGCTCGGCAGCGCTTTCGTTAAAGTCCCGGGTAGTGGTGGACTTTCCGGCCAGGGTTTAGGCGTGGCTGGTGGCCGTTGACAGCAGCGGTCACCGGCGGCTTCCCTTCGGGTTGGACGAACCCGAGCACGAAGGGAGGTCGGACCACCGGTGACCGCTGACTTCAGGATGGCACTTCTCGAACTGCTGCGCCAGTACCAGGGCGAGCCCGAGGTCGACGCCCTGCGGGAGGGCCTGCGCTGGCTCGCCCAGCAGCTGATGGAGGTCGAGGTCAGCGAACTCATCGGCGCCCAGCGCTACGAGCGCACCCCGTCGCGCACTACCTACCGAAACGGGTACCGCCCCCGGCGCTGGGACACGCGCGTGGGCACCATCGAGCTGCAGATCCCGAAGTTACGCCGCGGCAGCTACTTCCCCAGCCTCTTGAAGCCGCGGCGGCGCGCGGAGCGGGCCTTGCTGGCCGTGGTGCAGGAGGCCTACGTGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //