Array 1 17728-18225 **** Predicted by CRISPRDetect 2.4 *** >NZ_POTQ01000013.1 Limosilactobacillus fermentum strain CRL1446 Contig_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17728 36 100.0 30 .................................... CTGACGTATATTCCCAGACCCATGAAATGT 17794 36 100.0 30 .................................... GACTATCACTGACGTACTCACCTAACAATT 17860 36 100.0 30 .................................... CAACGTTCTCCGGTAATGAAACGACGATCA 17926 36 100.0 30 .................................... ATAAACATACAATTTAGTGGGGTGAATGTT 17992 36 100.0 30 .................................... ACTTAATTATTAGGAGGAACGCTTATTATG 18058 36 100.0 30 .................................... ATCTCACCATTCTGTTGATACTTACATACG 18124 36 100.0 30 .................................... ATGGTCAAATTGGGATGTTCCCGGCCACTC 18190 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : CTTCAATGCTTTGCTTGAGGTTATGTCCGTATAATTGGTGTAAATTCTAAATAGGACTTTGTGAAATCTGAAAGGAACTTCATTATGCCAAAAGTTGAATTAAATTTAGAGGATGACGAATTAAAGGARCTATTACTAGGTGATCGGGATAAGGCCATGCAATCAATTATGGCCRAGATCCTTGAYGAAATTCTTAAGTCCGAAGCGACTGAGCAGATTAAAGCTAAGGCTTATGAACGTTCGGATGARCGAACCAATTCACGGAATGGTTATCGGGTTCGTCAGCTTACCACCCGCGTAGGGTCTCTAGAACTACACGTTCCTAAACTCCGTCATGGCAATTTTTCAACACAGCTGTTCAAACGCTACCAGCGTAGTGAGCAGGCCTTTGATTTGRCATTAATGGAAATGGTAATCCAAGGTGTTTCAACACGTAAAGTAGCTGAGATTACTAAGAAGTTATGTGGGACAACCTTTTCTAAAAGTACGGTCTCTGGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 56026-50801 **** Predicted by CRISPRDetect 2.4 *** >NZ_POTQ01000014.1 Limosilactobacillus fermentum strain CRL1446 Contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 56025 29 100.0 32 ............................. CGTGGCTTTAGACGTGGAATCCGGTAATCCAG 55964 29 100.0 32 ............................. CTTACGAATTGTTCGGTCATAATCCACACCAT 55903 29 96.6 32 ............................C TACTTGCCGAAGGTGGGAGTTGAATGGTTTAA 55842 29 96.6 32 ............................C AAGCGCTAACTCGTCACGATCGTTAGCTGACG 55781 29 100.0 32 ............................. TGAAGCCCCATTTGTCGATTTCGTCTTTGAAG 55720 29 100.0 32 ............................. GACGTCACTTGCGCTTGGTCATAGATAAACGA 55659 29 100.0 32 ............................. GACGCAATTAAAAATTCGCAAGTCAATAGCCA 55598 29 96.6 32 ............................C CGCTAAAAATAGATAGCCAACCGCCGATCCAT 55537 29 96.6 32 ............................C ATGACCGGGTCTAAATGGTAAAAATTACACAT 55476 29 100.0 32 ............................. CGTGCGGGCTAATGGGAAGGTTGAAATCCCGA 55415 29 100.0 32 ............................. GCAAGTGGCCAGGCGGCCAGTGCCGTGCTCAC 55354 29 100.0 32 ............................. CCTGACTGCCTCCTTTTTCTCCGGCACGTTAC 55293 29 100.0 32 ............................. CAGTGACGTGTAGCGCTTGGTTTTGCCCTCTG 55232 29 100.0 32 ............................. AAAACCGATAATGGCGTTCCATCCTGATTTCG 55171 29 96.6 32 ............................C CTCTGCAAAAATCGAAGGACGATCAGCCCAAC 55110 29 96.6 32 ............................C TGGGTCCTGATACGCAATTCCGCCGGATCGTC 55049 29 100.0 33 ............................. CACTTCTTACTGTGGCTATTGTTCCGTCGGTTA 54987 29 100.0 32 ............................. TACCAACCAACTCAAAGCCTTACAGGAACAGG 54926 29 96.6 32 ............................C GCTTGGTGATGGTGCTAAGGGCGTACATCCGA 54865 29 100.0 32 ............................. TAACGCCAAAGCCCATTAGGCTGTGATCCTTT 54804 29 100.0 32 ............................. GATACACCCGCCGGCTTTAATAGTCAACACTT 54743 29 100.0 40 ............................. ATATCAGATGAACAGGTTAATATGATTATTAATTCTCGGG 54674 29 100.0 32 ............................. GGTACCATCTTATGGGGTACGTATTATTGATA 54613 29 100.0 32 ............................. CTTTACCAAACGCTTAGTGCTAACAATCGAGC 54552 29 96.6 32 ............................C GTCTTAGGGGATGCACGCGATCTATTAGAAGG 54491 29 96.6 32 ............................C GTCAGCCTGGAACTTAGGCTCTTACTCCGTGC 54430 29 96.6 32 ............................A AACCTTATCCGAGTAAGGCTCCCGATTGTCAA 54369 29 96.6 32 ............................C AGCTAAAACTTATCAATCAATATAAAGAAAAC 54308 29 96.6 33 ............................C AGGGCGGTTGATAGGAGGTAAAACATGGCGTTA 54246 29 100.0 32 ............................. ACATCCGGGCCTTTAAAATTGGCCGCTTCCTC 54185 29 100.0 32 ............................. TTGAACAACAACAAACTAGACAAAGCCAGTTA 54124 29 96.6 32 ............................C AGGACGCACCGGCGATCTACGCATCGTTTATG 54063 29 96.6 32 ............................C TGACGGGGCTTCGGTTGATGCACAGACTCAAC 54002 29 100.0 32 ............................. AATATGCTTATACGTGTTGCTGTATCGAAAGT 53941 29 100.0 32 ............................. ACGTTCGCTAATGACACCGTAGACTTGCCTAG 53880 29 96.6 32 ............................C TAAAAACGATTCTAGGCCCGCTTCACAAGACA 53819 29 96.6 32 ............................C TATGACGTGGCCTTGATGGGCTATGGGATCAA 53758 29 96.6 32 ............................A ATCAAGTATTGCCCGTTTTGTGGGAGGAAGCT 53697 29 96.6 32 ............................C TACCATAGATCTTAATTTGGTTATCATCGATT 53636 29 96.6 32 ............................C GTCACAATTGAAGTCAATTTAAGTACAAACAA 53575 29 96.6 32 ............................C CGTAAGACGTTGTCATAAGACAGGTCGATAGG 53514 29 96.6 32 ............................C AGGCTTTTCTTGGCAAGCTCGGCCCATTGCTG 53453 29 100.0 32 ............................. CGTTGGGGCCGGCAAGATGTACACGGGTGACT 53392 29 100.0 32 ............................. CGTTGGGGCCGGCAAGATGTACACGGGTGACT 53331 29 96.6 32 ............................C AGATATTGAGGTAGACTAAATGAGTGAAGCAA 53270 29 96.6 32 ............................C TTGTCCCAATGTAGCTTGCCCTGCTCTTCAAT 53209 29 96.6 32 ............................C ACAATTGCCTTAAACAAACGGGCGCACACCTA 53148 29 100.0 32 ............................. GGCATATCGAATGAACAGTTATATGCAAAAGA 53087 29 100.0 32 ............................. AAAGATGAAAACACGCTAGAACACTTGCTTGA 53026 29 100.0 32 ............................. ATAAATGACCTAGGATAGTCATATATGGCGCA 52965 29 96.6 32 ............................C GATGCCTGCATCTCTGCAAAAAGTCGCTAAGT 52904 29 100.0 32 ............................. AACGGGGTTCATCAAGCATATATTTTAATTGA 52843 29 96.6 32 ............................C ACTGTCACCAAAACGCTTAGTAAGCTAGGCGG 52782 29 96.6 32 ............................C ATTTGTTGAAGTTTGGTCTTGTCTGAATAAAG 52721 29 100.0 32 ............................. TAAACAGACTAGCCAAGAGGTTAATAAACCAG 52660 29 100.0 32 ............................. TTCATAGTCAACGTTAGTAATTGTAGTTACCA 52599 29 96.6 32 ............................C TTGGGGTTATTAAAGGCGAAGTAAAAGTTATT 52538 29 96.6 32 ............................C CGGGCACAGACACTTGGTGACGGCCAAATTCA 52477 29 96.6 32 ............................C TTCACACTGAAATGTTTCGTCATTAAACATAA 52416 29 100.0 32 ............................. TCAGCACTATAAATCAAGTCGTTATCTTCGTC 52355 29 100.0 32 ............................. TACTTTTCGTTCATCGGTTGCAAATACTTTCT 52294 29 100.0 32 ............................. ATGTCAACGCTTCAGTACGGATCAACCAATCT 52233 29 96.6 32 ...........................T. GAGGGCCTTGGCGACGTCCGTCGTCGAGTGCT 52172 29 100.0 32 ............................. TATCAAGGCTAAGCGTTACACTATCACGTTTG 52111 29 100.0 33 ............................. GGTGGTATCGTATCGACTGATGTCTCCAAGACG 52049 29 96.6 32 ............................C TATAAACGTCAATCGAACCGGGTTTCATTTCT 51988 29 96.6 32 ............................C GCTCGTGTCGGTCTTGCCGACGCTAGCTAAGG 51927 29 96.6 32 ............................C TTGGATTGTGAAATCCAAGATATAGTTAAGTG 51866 29 100.0 32 ............................. CTCCTTGTGTATAGTTTTGTCTAGAGCTTAGT 51805 29 96.6 32 ............................C CCTTACGATCGCTACTACGAATAGGAGAGAGA 51744 29 100.0 32 ............................. TATTAATAACCCGGCGTTGGGGTTAAATCAAA 51683 29 96.6 32 ............................C GGCGTTAACTTCGCTGGAATCTACGGTGGGAC 51622 29 96.6 32 ............................C TTGTGTTCCATCGTCACGACCCTTACCATCAG 51561 29 96.6 32 ............................C GTCTACTACACGTTACTAGAATTCCATCAATG 51500 29 96.6 32 ............................C GTTACTGATTTAGCCGAGAAAGAAATCAAAAC 51439 29 100.0 32 ............................. CTGTTCAGTGGTGAAGGATAACTTTACGTCAA 51378 29 100.0 32 ............................. CGCATACTCTTCGATAGCAAATTGCCAAACGT 51317 29 96.6 32 ............................C GCAGGCGGCAAAGCACGTTTCACGACGACCGA 51256 29 100.0 32 ............................. GGACACAACTATACCCAAGATGATATTAAATG 51195 29 100.0 32 ............................. AACACCATCGGTTTAGCAACCAATAACAACAT 51134 29 100.0 32 ............................. CTTCCTTTCTATCCAAATGTTTCTACTTGGAT 51073 29 100.0 32 ............................. GATACGAATAGTCCTTCTCGGGCAAGTTCATG 51012 29 96.6 32 ............................C CGCAGACAAAGTGGCACTGAAGCCGTTCTTAA 50951 29 96.6 32 ............................A GAGTGATACTAAATGAACCAATTAACCGACAA 50890 29 100.0 32 ............................. GTAATTATTTCCATCTGACACCTTGGCAGTCC 50829 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 86 29 98.3 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : ACATGGGCTTTAGTCGTACGAAGGAGTGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTTCAAACATCACTAAGCGGACGGAACACCTGGTTGAAGAGTTCCACGAGCGCAAATTCAAGTACTCACAGTACGTCTGTGTGTTCCTCGATGCTACTTACATTCCGTTACGCCGTGGTACCGTTGAACGAGAAGCCGTTAACGTAGCGATCGGAATTCGAAGTGACGGCGGTAAGGAAGTTCTTGACTACAGTATCGCACCGACCGAGAACGGAGCCGCTTGGTCTGAACTACTCCAGGGATTACGCGCACGGGGGATTAAAGATATTCAGTTGTTCATCGCCGACGGTTTAGTTGGACTTCAATCTGCGATTGAGGCTAACTACCCGCAGGCGAAGTTTCAACGGTGCTGGGTCCACGCAGAGCGCAACCTTTTAGGGTACGTTCGCAAAAACGATCGCAGGGAGATTATCACCGACTTTAAGGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 319-1871 **** Predicted by CRISPRDetect 2.4 *** >NZ_POTQ01000055.1 Limosilactobacillus fermentum strain CRL1446 Contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 319 36 100.0 30 .................................... GAGTGGCCGGGAACATCCCAATTTGACCAT 385 36 100.0 30 .................................... CGTATGTAAGTATCAACAGAATGGTGAGAT 451 36 100.0 30 .................................... TCTTATGGTAGATTTTTATAATGACAACCT 517 36 100.0 30 .................................... AAGCATTAAAAACGTCCTCAATCAAGTAAA 583 36 100.0 30 .................................... GGCGGTAGGGTGTTAGTTGGTGATCGTGTG 649 36 100.0 30 .................................... TTATTTGATGGGTCAACTCCAGATCATACA 715 36 100.0 30 .................................... CTGTTGTATTAGTGGTGGTCATGCTATCAT 781 36 100.0 30 .................................... GTGGGAGGCTTCCGACTCACTCAAGAACGA 847 36 100.0 30 .................................... ACGCTGACACTCTTAAATCGATTGGCCTGC 913 36 100.0 30 .................................... TGGAAAATGGATCATTAACGGTGTGAAGCA 979 36 100.0 30 .................................... GCGTGACGCCATCAATCTTTGGTGAGATCG 1045 36 100.0 30 .................................... AAGCAATCGACTGTGTTAATTCTTCAGTGA 1111 36 100.0 30 .................................... AGCAGCCAATCCTTATGATCCGCAGTATGT 1177 36 100.0 30 .................................... TGACGATATAGTTGCCAACCTGGCGTTGTT 1243 36 100.0 30 .................................... TGGTGACGATAGTTACGCCCTTGTGGGAGT 1309 36 100.0 30 .................................... CATAATAAGCGTTCCTCCTAATAATTAAGT 1375 36 100.0 30 .................................... AACATTCACCCCACTAAATTGTATGTTTAT 1441 36 100.0 30 .................................... TGATCGTCGTTTCATTACCGGAGAACGTTG 1507 36 100.0 30 .................................... TTATTTGATGGGTCAACTCCAGATCATACA 1573 36 100.0 30 .................................... CTGTTGTATTAGTGGTGGTCATGCTATCAT 1639 36 100.0 30 .................................... GTGGGAGGCTTCCGACTCACTCAAGAACGA 1705 36 100.0 30 .................................... ACGCTGACACTCTTAAATCGATTGGCCTGC 1771 36 100.0 30 .................................... TGGAAAATGGATCATTAACGGTGTGAAGCA 1837 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.9 30 GTACTCGGAACTACTGATCTGACACTCATCCAAGAC # Left flank : CGTGTAGTTCTAGAGACCCTACGCGGGTGGTAAGCTGACGAACCCGATAACCATTCCGTGAATTGGTTCGCTCATCCGAACGTTCATAAGCCTTAGCTTTAATCTGCTCAGTCGCTTCGGACTTAAGAATTTCATCAAGGATCTCGGCCATAATTGATTGCATGGCCTTATCCCGATCACCTAGTAATAGCTCCTTTAATTCGTCATCCTCTAAATTTAATTCAACTTTTGGCATAATGAAGTTCCTTTCAGATTTCACAAAGTCCTATTTAGAATTTACACCAATTATACGGACATAACCTCAAGCAAAGCATTGAAG # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCGGAACTACTGATCTGACACTCATCCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 174983-176523 **** Predicted by CRISPRDetect 2.4 *** >NZ_POTQ01000001.1 Limosilactobacillus fermentum strain CRL1446 Contig_97, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 174983 36 100.0 37 .................................... GAAATTAGATTGCATGATTGAAACTCCTTTTCTTTGA 175056 36 100.0 37 .................................... TGATTGAACAAGCAAAGTAAGTGCGGATCAACCTTCT 175129 36 100.0 37 .................................... ATGAATGGCTTGATAATTTGGCCCTTCCCTTGCATCG 175202 36 100.0 37 .................................... TGGAATGTGGTAGAAATTGGCAATCTCCTTCATCTGA 175275 36 100.0 36 .................................... TCATGAATAGCGCTATACAAACCGGGCAACATTAGC 175347 36 100.0 33 .................................... AGCACCTGCTTACGATACCAAATCTTAGTTGGC 175416 36 100.0 36 .................................... TAGTCGTATAAATGCTAGTGCTATTGATAGCAATTA 175488 36 100.0 35 .................................... TGTATCACCTAAAATGGCTTCAATCTGTTCTTCAA 175559 36 100.0 35 .................................... TGCATGACCGCCTACATATTTCATTTTAATTTCCT 175630 36 100.0 35 .................................... TTACTTCCTTTTCGCCTGGTGTATAAACAAAGTTA 175701 36 100.0 35 .................................... TCTCTGCACTGTAGAAAGACAAATCAAAGAAAAGA 175772 36 100.0 36 .................................... AATAACATGATGGAAAACAAGTAAATTAAAATAGGC 175844 36 100.0 34 .................................... TGTTCCACCTAGCTGTTCTTAGTTTTTCTGGATC 175914 36 100.0 34 .................................... TTTGTCTTCAAGTACATTGCCATGTGGGTTGCCG 175984 36 100.0 37 .................................... AACGACTACCAGGATGGTAAGGAAATGATTCAAAAGT 176057 36 100.0 34 .................................... TTTCTAAGATCTTTTTGTAAGCACTAATCATTTT 176127 36 100.0 36 .................................... TAAATCATAGTCGCTTGTATTATGGCTTAATTCTTC 176199 36 100.0 35 .................................... AGGTCGTCCCTTGCCTCCTTAACACTACTACTAAT 176270 36 100.0 36 .................................... AATAAGTGGGCGTATGGTTGTAAGTTACTTAATACA 176342 36 100.0 39 .................................... ATTCTTGATTGTTTGGTTCATTTTGTTTACCCCTTTTCT 176417 36 100.0 35 .................................... GTTTCTTCGTTGATATCTTCGTCGTATCCCCAGCC 176488 36 72.2 0 .....G....A..T....TT......G....T.GTA | ========== ====== ====== ====== ==================================== ======================================= ================== 22 36 98.7 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCGGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTAATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTTATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATGTAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTATGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AAAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCTCGTTGCAGTAGACTAGATATATAATTTATAATTGACGTATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACAAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTAGTGTTTGATAATAGAAAGTGTTATCTATCGGAGCGAGTGATTGAATATTGCATTCTCAATCACATTGGAATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //