Array 1 246369-247655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015559.1 Pasteurella multocida strain USDA-ARS-USMARC-60215 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 246369 28 100.0 32 ............................ AAGCTAATGATGTAATGGGTAATGTTGGGCAA 246429 28 100.0 32 ............................ CTCAAGAACACGGTCACAATTACACACAAACC 246489 28 100.0 32 ............................ TAACGCTAATTTGGCATCTCCGGCTTGTTCTG 246549 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 246609 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 246669 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 246729 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 246789 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 246849 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 246909 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 246969 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 247029 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 247089 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 247149 28 100.0 32 ............................ ATTGCCTTTCGTTGGGCAAAAAAGAATGTTTA 247209 28 100.0 32 ............................ ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA 247269 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 247329 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 247389 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 247449 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 247509 28 96.4 32 .................T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 247569 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 247629 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1523513-1522464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015559.1 Pasteurella multocida strain USDA-ARS-USMARC-60215 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1523512 28 100.0 32 ............................ ACAACAAAAAACTTGTGAACGTTTAGCCGCAA 1523452 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 1523392 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 1523332 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 1523271 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 1523211 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 1523151 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 1523091 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 1523031 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 1522971 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 1522911 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 1522851 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 1522791 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1522731 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1522671 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1522611 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 1522551 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 1522491 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //