Array 1 165773-167243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSD010000009.1 Pectobacterium brasiliense strain CFBP3230 Pectobacterium_brasiliense_CFBP3230_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 165773 28 100.0 32 ............................ TGTGGGCTGTCCATTTTCATATACAGGCGACG 165833 28 100.0 32 ............................ TTTAACGAATTCGGTAAACTGCTTACGGCCGT 165893 28 100.0 32 ............................ TACATACGGGGCCAGTTCATCAAGAGGGCCGC 165953 28 100.0 32 ............................ GTTATAACCATGTCGATTTAAGAAAAGGAATT 166013 28 100.0 32 ............................ GAAGGAGAAAGACACAACCATCGGCTTTTTCA 166073 28 100.0 32 ............................ TCGAACGGGAAGATGTCGAAGCGGTATTGCGG 166133 28 100.0 32 ............................ AACTCAAGAATCCGCTTGGCCGCGAAATAAAG 166193 28 100.0 32 ............................ ACTCAAAAGCCAATCAACAGTAACACCCAGCT 166253 28 100.0 32 ............................ ATGTGCCGAGCGAATGCCGCTTTATTGCCATC 166313 28 100.0 32 ............................ TCCGTCAATGGCCTCTTGTGGCAGACCAGCGA 166373 28 100.0 33 ............................ CCTACGCAGAGACAAAATACGGGTGGTACTGAG 166434 28 100.0 32 ............................ TGGCTACCCGTCAGATTCAGGAAAACACCCCT 166494 28 100.0 32 ............................ AGATGGGCAAGCACTGCATGTGTTCCGGCACA 166554 28 100.0 32 ............................ ATGACGGTACTTTCCGGGCAAGATGCTGCTGC 166614 28 100.0 33 ............................ CTGTTCGACCTTGACCAGCTCACGCTGGAATAC 166675 28 100.0 32 ............................ ATGCGTGGCCAGCCTTCAATTGTTTCAAACTC 166735 28 96.4 32 ...........T................ AATGTCAGCCGTTTCTTACCGCGATCCATAAG 166795 28 92.9 32 ..........AT................ ATTGCCAGTGCTGCTGGCATTAACTGGAGCGA 166855 28 96.4 32 ...........T................ CTGCGCCCGTACGGCTTCCGCGTCGCCGAACC 166915 28 96.4 32 ...........T................ AATACCAGAGTGCATGACTCTTCTGTCAGATA 166975 28 96.4 32 ...........T................ TACGCATGGATTAGGTTATGAGCCTGTCATGC 167035 28 96.4 32 ...........T................ AAATACACTGGCTCGCCTTCATAATCGACAGC 167095 28 92.9 33 ...........T......T......... ATCGATATTAATGTCTACATATTCGCGGAATGA 167156 28 92.9 32 ...........T.C.............. ATGCGAGATTTTCTCAATGCGAAAGAAGAAGT 167216 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATTCATAGCATATGCAGATACCTGACATAGGCCTATCATCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAACGCAGCAAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATAATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTGGCTGTGGCAGATCTGCCTGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 174590-173603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSD010000009.1 Pectobacterium brasiliense strain CFBP3230 Pectobacterium_brasiliense_CFBP3230_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 174589 28 100.0 32 ............................ ATTTAAAACATGGAGTCAATTTCTACGACCAA 174529 28 100.0 32 ............................ TGCCTCCCTGAAGGAAGCGCGGTCACCAACAC 174469 28 100.0 32 ............................ GATATGAGCCAGCCGTTGTTGTTGATCACATC 174409 28 100.0 32 ............................ TCACGGACAAGGCTATTACAAGGCGCAGGATT 174349 28 100.0 32 ............................ AGCGCGAAAGCGAGTATCACTCACCTCACATG 174289 28 100.0 32 ............................ AAAGGACGCACCATCCATGCCAGTTCTTGATG 174229 28 100.0 32 ............................ TCCGGCATAGCCAATTCTTCAACAACCTCACC 174169 28 100.0 32 ............................ AGTACCGGCGCTGCTGGTTCTGCGCTGGCGGG 174109 28 100.0 32 ............................ ACGAAACGTGGCAATCAAAGTATTCACGTATT 174049 28 100.0 32 ............................ ATGCTGCGACACGTCGCCAGCTCGGTTTCCGT 173989 28 100.0 32 ............................ ACACGGGGAAGCCTGGGCGGCACGCAAGGGAA 173929 28 96.4 32 ...........G................ TTTGCTCTAAAGACAATTCGAGTACCGCAAAT 173869 28 96.4 32 ...........G................ ATATCCAAAACCAGAAAGCGGTAAACAATAAT 173809 28 96.4 32 ...........G................ TCAATGCTCATTGAGCCGCGAGCAACAATGAT 173749 28 96.4 32 ...........G................ GTTAATTTATTTGCTAGTGAGTTATTATCACC 173689 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 173629 27 78.6 0 ....-........C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACAGAAGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTATGGGGAATGAAAAATTGCGGATTGAACGTTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGCGCAGGAAGCGACGTATTTTTTGCAGACGTTATGCACGCCCAACCCTAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGACCCTGTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 183166-183973 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSD010000009.1 Pectobacterium brasiliense strain CFBP3230 Pectobacterium_brasiliense_CFBP3230_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 183166 28 100.0 32 ............................ AAGACCCGCCACGGCAATCAGAGCCTATTGCA 183226 28 100.0 32 ............................ GAAAGTCGTCCGCATTGCGTCCGCACTTGATG 183286 28 100.0 32 ............................ GCCAATGTCTCTGCGTCGCTGTTTGTGGCACT 183346 28 100.0 32 ............................ TGGAAGGCACTGGCATCACCAGTCTGCCGGAT 183406 28 100.0 32 ............................ AGCATCCTGTAATGTGAAAGTTTTCATTATGG 183466 28 100.0 32 ............................ AACCCGCCGCAGCAGAAACAAACCAGCAAAAA 183526 28 100.0 32 ............................ ATCAGAATTACGATTAGCCATTCTGGCAGAGT 183586 28 96.4 32 ...........T................ ATGCCAAAGAGAGCGAGAAACCAGCCAGGCAT 183646 28 96.4 32 A........................... GAGAAAAAACTATGTCAATCAAACAAAGGAAC 183706 28 100.0 32 ............................ AGGTTGTCACAGCCGTTGCGTAACGCGGTCAG 183766 28 100.0 32 ............................ ATGTAGCTCATCCCGTCGTTGAACAGGTTCAT 183826 28 96.4 32 .................T.......... CATTGCGTAGTGCCAAGGACAACGACGAACCG 183886 28 92.9 32 .............C......A....... ATAAAAAAGCCCGCAGCGATTATCAGCGGGCT 183946 28 75.0 0 ...........TGC......T.C..TG. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGGTTTCTGAGTGCAAAACCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTGCGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCCCTGCCGTTTGTGCAAATCAAGAGCTTGTCTAACGGGCAGATGTTTTTCGTGTTTGTAGAACATGGCCCGCTACAGGACGCCCCTATCGCAGGACGCTTTTCCTCCTACGGCCTAAGCGCAGAAGCCACCGTCCCTTGGTTCTGACCCTTTTTTGGCGACCATCTGCAAGTCATTGATTTTTAATTGCGGCTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : ATTATCTAAATGCGTCGCTGGTGCGACGCATTTTGGAAAACTACTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCGGCCGTGGTTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAAGCTACCTTTTAGGTGCGCTGGCATGTCGTCGCTGCCTTCATATGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAATGCAGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGGGCGATAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCACGTGCCAAAATCGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //