Array 1 2154-3397 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJPD01000061.1 Klebsiella pneumoniae strain EuSCAPE_BE062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2154 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 2215 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2276 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2337 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 2398 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2459 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [2513] 2513 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2574 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 2635 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 2696 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 2757 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 2818 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 2879 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 2940 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [2951] 3002 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [3013] 3065 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [3076] 3127 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 3188 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 3248 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 3309 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 3370 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 249196-253064 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJPD01000002.1 Klebsiella pneumoniae strain EuSCAPE_BE062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249196 29 100.0 32 ............................. GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249257 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249318 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249379 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249440 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249501 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249562 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249623 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249684 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249745 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249806 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249867 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249928 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 249989 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250050 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250111 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250172 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250233 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250294 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250355 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250416 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250477 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250538 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250599 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250660 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250721 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250782 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250843 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250904 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 250965 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251026 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251087 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251148 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251209 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251270 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251331 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251392 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251453 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251514 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251575 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251636 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251697 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251758 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251819 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251880 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251941 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252002 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252063 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252124 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252185 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252246 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252307 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252368 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252429 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252490 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252551 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252612 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252673 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252734 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252795 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252856 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252917 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 252978 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253036 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //