Array 1 221536-221101 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JACSDO010000001.1 Streptococcus pyogenes strain TSPY125 TSPY125-contigs-1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    221535	    36	 100.0	    30	....................................	CTGGAAAAAACGTCATGAAAGCCCCCGATG	
    221469	    36	 100.0	    30	....................................	TGAGGCTATACACTTGGTACAGGATAACAT	
    221403	    36	 100.0	    30	....................................	GTGTGCTTGGCTGGCGCATCGCAATATTAA	
    221337	    36	 100.0	    30	....................................	CTGATTTTGTTGCGATCCATAAAAGCACCG	
    221271	    36	 100.0	    30	....................................	GCTAGCGAAGATAGAGCTAGACAGACAAAG	
    221205	    36	 100.0	    30	....................................	CACTGCGGCAGTCGACCAAACAGAGATTTA	
    221139	    36	  91.7	     0	..............T...G.............T...	|                             	CT,T [221104,221110]
==========	======	======	======	====================================	==============================	==================
         7	    36	  98.8	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGAGACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTGGAGTGATGGAACAAACATTTTTTATGATTAAGTCAGATGGGGTTAAGCGAGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAGATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGTGGGTCTGATTCAAGAGACTCTGCTAGGCGTGAGGTCGCTCTTTGATCTCATCAAAGTAATCTCGGTAGCTCCGCTATTCTCTTGCAAGATAATCCGTAAGAAAAGATAGGCAAAGGCCTACCTTTTTTGTTATAATAGAAGGAAAGACTAA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [6-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.55   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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