Array 1 360518-359232 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000003.1 Thermotoga sp. 38H-to contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 360517 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 360452 30 96.7 36 ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 360386 30 100.0 37 .............................. AGCGATAAGAGTTTAGTGGTAGTAACCAACATGGGAA 360319 30 100.0 37 .............................. GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 360252 30 100.0 35 .............................. CATGTGTACAAAAAAGTTGAGTATTACATCGATGG 360187 30 100.0 38 .............................. TCGAAGGGGACATCGTCCTTCCTTATCGTCACACAGAG 360119 30 100.0 36 .............................. CTTCAAGCATCGCAACAAGCTCGTCAGCAATTTTCT 360053 30 100.0 37 .............................. CCATCAAGAGTATCTGCGTTTGTTATTTCAGTTAGAT 359986 30 100.0 36 .............................. TTCGCAAAGCTAAACTTGCTATTGTAGGAGTAATAT 359920 30 100.0 35 .............................. CCCGAAATAATTCTTGCTATAGCTTATGCAGAAAG 359855 30 100.0 35 .............................. TCAAATCCACCACTAATGTTAAAGATATATGGAAA 359790 30 100.0 35 .............................. AAAACGTGCTCATGTCGACGCAGTGCTCACAGGAT 359725 30 100.0 36 .............................. TTTCTAAATGGTTGGCTGAGACGTACGACGAACATA 359659 30 100.0 38 .............................. GCAGAAGCCATCCCTGTATAAGTCAGGAGCAGAAAAGT 359591 30 100.0 35 .............................. CAAACCATGAGAAGAATCCAGTTGATCTACTACGC 359526 30 100.0 37 .............................. TTCTCTCCCTTTTTCTCCTTCACCGTCACCTTCATCC 359459 30 100.0 37 .............................. AAAGAGTAGTGAAAAGTGAAATCGATGTCGAAATGGA 359392 30 100.0 35 .............................. CGGTCTCATCTACAATGATGACGGCTCTCTCTGTG 359327 30 100.0 36 .............................. GGGGATTTCTAGAGGAGCACTCGTCTATGTTCCATC 359261 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.3 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTAATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 391839-390346 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000003.1 Thermotoga sp. 38H-to contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 391838 30 93.3 35 ......G.............G......... TACTCAGGGATCCAGCAAAATACCTTCCGTTAGCC 391773 30 100.0 35 .............................. CTGGAAGTTTCATTGTCGAAAGGTATTCTTACACC 391708 30 100.0 36 .............................. CTGATCAGAAGAGCGTTTCCGAAACCGTCTCCCATT 391642 30 100.0 39 .............................. CAGAAGGCATGCCATCCTGGTGTGGATCGCAACAGCAAA 391573 30 100.0 36 .............................. AGGACGAGGAAGAGGAGTTTCTTTACGTTGCAGAAG 391507 30 100.0 37 .............................. CCGGATGCAGGAATCAGCGCCGTGAAGGATGCGCTCA 391440 30 100.0 36 .............................. GAGACGTAGTAAGAAATCTTTATTTTGCAGAGAACT 391374 30 100.0 36 .............................. TCCAGACATATATCCACTTTCGTTTTTGTTCTATTT 391308 30 100.0 37 .............................. AGAACTATATGAAATTCATCGAACTGTTACTTTGCAA 391241 30 100.0 35 .............................. ATTTTGGTTGAGATTGAAGGGAGAACAGTAGAGAT 391176 30 100.0 36 .............................. TTCTTTCTCTGTTTTCTCCTTCGTTTCGAATCCTGA 391110 30 100.0 37 .............................. TCGACAGGTTGATTTTATGATACGAGACATATTAAAA 391043 30 100.0 37 .............................. TCGTGAAGGGCGCTCGTTTCGAAGCTGATACACGCAA 390976 30 100.0 36 .............................. GCTCCCATGTCATTCGAGCAAGATTCTCGAAAAAAA 390910 30 100.0 36 .............................. TAGAATTTATCGTTTTCGGAAGGTTTTTTGGATATG 390844 30 100.0 36 .............................. GACTTTGAATAAGCACGATATTTTTCTACTTTTACT 390778 30 100.0 37 .............................. CCCCGGAGCAGGCAAGGGAGATTGTTAGGAAATACAG 390711 30 100.0 36 .............................. TCTGTTGTACCAACCCAGTTTCCGTTCCAATCCCAT 390645 30 100.0 37 .............................. CATACGAGGAGCTTGCACGCGACTTTGGAACAATCAT 390578 30 100.0 35 .............................. AATCACAGCTAACCATGTTCGTATCGAAAATCTTA 390513 30 100.0 42 .............................. CTAAATCAACCTCACTTTTCACAAATCTTTGAACCTCTGCAT 390441 30 100.0 36 .............................. CAACCTTTTCTTTGGCATGAGAAAATAGCTTTGCGG 390375 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 23 30 99.7 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCATCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTATCACAAATTCTCTTCGTATTGTCTCTTCATATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTATATCTATCTTCCAGTGCCAGATACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 3 404000-404756 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000003.1 Thermotoga sp. 38H-to contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 404000 30 93.3 36 ............T.......G......... GGGCGATGTAATTCCCTCGATGCTTCGAAAGTACGA 404066 30 100.0 37 .............................. TAGTGTTGCTTCCATTTTGATGAGTTTTCCTGCTTGT 404133 30 100.0 35 .............................. ACAACTTCTCGCAAACGAATTCTTGTGATGCTTCT 404198 30 100.0 36 .............................. TATTCTCGTTGATAAAAACCTCTAAACCAATCGTAA 404264 30 100.0 36 .............................. TTATTCTGACATAGAGGAAGTATTGGACATTGTTGC 404330 30 100.0 36 .............................. AGAACAACGCCAACGAGATCTCTGACGGTCTTCTTG 404396 30 100.0 36 .............................. TAGGTACATAGTCGGTGAGTCGTATTATGAACCATT 404462 30 100.0 37 .............................. TAGTTGTAACTTCAACTGGGACAATCCAAATAGTCAA 404529 30 100.0 35 .............................. TAGAAAAGAATGCACATGTTCTCCATTTTCGAACA 404594 30 100.0 37 .............................. AAAACGAAAATAGGCATCTTGCCTCTTACCGTGTTTA 404661 30 100.0 36 .............................. TAGAGCAGGTACAGGAAATCATCTACCACGGAGAGC 404727 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.4 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCGGCATGTGAAGGCCCGGAGAGAACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACCCTTTTACCTGTCTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGCAGTCTCAGAAGGTGCTTCCTTATGTATTGAACGGGAATCGCTATAACGAGAACGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACGTTTATGAGATCGACGATCTCTTTCCTCCTTGCCCAGAGAACAACTTCTTCTCCGTTTTCATACAGCATCTGTGCAAAAACCGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCAAAAACAGAGTTCCTCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCATAAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTTTCTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAATTAACTGTTAACTTCCTGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCTACTTTGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 291202-292100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000001.1 Thermotoga sp. 38H-to contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 291202 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 291268 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 291334 30 100.0 37 .............................. TCTCGGATATCAAAATGCTTGAAATTGTTGTTGATTC 291401 30 100.0 36 .............................. CTGGACCGGCCCGAACAAAACGGGCACAAAACTCGT 291467 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 291534 30 100.0 36 .............................. ATTTTCTCCATCTGAAGAAGCAATTTTAAAAATAGC 291600 30 100.0 38 .............................. ATAGACGAAAAACGGAACTGGATAAGCGAAACTGAAAG 291668 30 100.0 36 .............................. ACTCCATGCGATATAACGGAAGGAGGGGATTGAGAA 291734 30 100.0 38 .............................. CTTTTGCAGAACGTCTATGATAGTATCACTCCTATTCT 291802 30 100.0 39 .............................. TAGCTTTATTTCGGTGATGTATCGTTTTCCGTTCCTGAA 291871 30 100.0 36 .............................. TGATTTCCTCACTTACCTTCTCGATGTTTTGAAAAA 291937 30 100.0 37 .............................. AGATTTCGAATGGTGGTATGTCCAGTACAGGACGGAG 292004 30 100.0 37 .............................. TTAGGATGGTAAGGTTTAGTGGAAAAAATTTTAAGGT 292071 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 98.1 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : ACTTCCTCGCAGAAAGTTTGAAAATATCCGGGCTACTTCCCGCTCTCGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGACTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCTTTCGGCCTCGACTGGGGAATTCTCTCGATCTTGATGCTGGTGGGGCTCATCCTCGCGATGGAAAGCTTCGAAAGAGCAAGAATAAGTTGAGATATCAACAGTAAAACAAAGGCAGGGGATTTCCCTGCCTTTTTGTTTTTTTATGGAGTTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCCCATTGAGTTCAGGAGAATTTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCTCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTTCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCTATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAATTAACTGTTAACTTCCTGAATTCAAAGCACTTACATGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTCCTTCCACTGCCAGTCACACGCATCACCCACTTTGTG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 2 384494-383266 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000001.1 Thermotoga sp. 38H-to contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 384493 30 100.0 35 .............................. GGAGGTGAGAGTATGGATGAAAAAAGAATTGAAAT 384428 30 100.0 36 .............................. AGCAGTCTTTGACGACAGCTTTACCGTTGAACACGC 384362 30 100.0 36 .............................. TTTTTCTTTTAATCACACTTTTAATCGTCACATACT 384296 30 100.0 37 .............................. GTTTAGCGTACGCTACCCTCACTGCTTGTTCATCTGT 384229 30 100.0 37 .............................. AAGAAGAGTGCTACCTGCCGGCGAAACAGCTTCTGGA 384162 30 100.0 38 .............................. GGAGCGTACATTCCACGTGCAGAAATCGAAAAATACGT 384094 30 100.0 37 .............................. ATACAACCGCAACAGTCAAGGAGATTGGAAAAGCGGT 384027 30 100.0 34 .............................. AAGGAGATTCTCGATGACGTAGAAGACGATCTTT 383963 30 100.0 37 .............................. AGATGGGAAAGAAGTGGTGTTTACATCACCTTTGTAT 383896 30 100.0 38 .............................. AAGGATTGAGTGAGCTAATGGGAGAAAAAACCTCAAAA 383828 30 100.0 38 .............................. AATAAAGTCTGGCTAACAACAGTCGACGACAAGCTCTG 383760 30 100.0 38 .............................. AACAACGACGGGATTCATCAGCTTAAAAGCGATCTTGA 383692 30 100.0 36 .............................. CGTTGACCATAGTCGTCTGCCTTCGTTTGTGAAAAT 383626 30 100.0 37 .............................. TAACATATCAATTTTTAAGGTTCGTTCGGTTTAGAAC 383559 30 100.0 35 .............................. ACGTTTCCCAGCCTTGCTGTGTATTGTGTCACTGT 383494 30 100.0 36 .............................. CCCTTATAATGTCTGAGACAACGTTGTATAGCACGT 383428 30 100.0 37 .............................. ATACAAACACAACAAGAGTTGGAAAAGACAAAGAAAA 383361 30 100.0 36 .............................. TACCGAACATGTTCATCAAAAAATCAAGATTCATAC 383295 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 100.0 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : AAGACACCGGAAGAAATCTACTCAACAATTGTGAAGATAAGAAAGATTTTGAAACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCAAGCGATGGAAGCTTCAAGGGTTACATCAGTCTGCCAGATCGCTATCTTTCCAAGAGAGAAATAAAGAAACTCGCGGCAATCTCTCCAAACACCACGGTCAACATCATAAAAAACAGCACCGTTGTTGAAAAATACAGAATAAAACTTCCACCTACGATCTATGGATTCGAGGAACTTCGGTGCAAGAACGAGAACTGTATCACCAATCCCGCACACGGTGAAAACGCCTCACCTTCTTTCGTGAGAGACGAAAAGGGACAGTTCATATGTGAATACTGTGAGACTCCACATTCTTTCGAAGAGATCTGGAGTATTTGAGAAATTCACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTTTTTTATTTTACCCCTGATAACCCACGCGAACTCACTTGATTAGTGA # Right flank : CCATTGAGTTCAGAGTAAATTATACCACAAACACAAACTGAAAGCAAGATGTTTTTTGAACTTCCATATACTCATTTTCCATAAACGATTCTAACACATAAGGGAGTGCCTTCAAGAACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAGAGAGAGAATTCAAGGCAAAAACAAAAGATTAATTACATCAACCTACGTCAGGGCATTTTGGGGTGTTTTGGGCAAAAATCGATTAGTTCCATATTTCACAAATAGATGAAAAAAGTTTTCCCTCAAAGAGTTAGAAGTTAACTGTAAGATGTACGAATTTCTGCTACTTACACATCATCATTCACCACAAATTCTCTTCATATTGTTTCGTCTTATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCTACCTTCTGATGCTAAATACATACAACACCCACTTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 3 492817-493982 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000001.1 Thermotoga sp. 38H-to contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 492817 30 90.0 38 ..........T........GC......... ATAATCGACGAGCTAATAGATGCTATCAGAGAATCACT 492885 30 100.0 34 .............................. AAATAAGTCACAAGCAGTTTGTGAAAAAATGCGC 492949 30 100.0 38 .............................. AGAAATAAGCGTTGATAAGTTGAACGAATTAAAAGCTT 493017 30 100.0 36 .............................. AGTCGAGAATCGTCAAGAGCTCATCCTCTACGTCAT 493083 30 100.0 37 .............................. CCAGAACACGTTACACAATAGGCCCCGTCTTGAAGAA 493150 30 100.0 37 .............................. AAGCATCGGAGCTAATTGAAAGAGTTTCGAGAAAACT 493217 30 100.0 36 .............................. GTGCAAGGGATGTAATAACTGCCATAAATGTTCTTC 493283 30 100.0 39 .............................. GGGAAAAAATATCGAATTGTATTGGAGGAGATATCTGAA 493352 30 100.0 36 .............................. TAAACGAACTCCAGACAAAGATATATGAGGCGAATA 493418 30 100.0 38 .............................. CTGGGTGTGTCCAGAGGCGCCCTTGTCTACGTGCCGTC 493486 30 100.0 37 .............................. TCAGCAACCGCATCGAACTCCTCGAGTCTCCTGCAAT 493553 30 100.0 37 .............................. AAATCGAAGAGCGGGAAGACTATGTTTACTATCTCTT 493620 30 100.0 36 .............................. GACGCAGTACAACGATACTTTTGACCCCGTAAATGG 493686 30 100.0 37 .............................. GTGAGCTTGAAAGGGATTTCATCGTAGAGGGAGAAAA 493753 30 100.0 36 .............................. TGGAAATTACAACGCAAAATACTCTGTCATCAATTG 493819 30 100.0 37 .............................. TATTTCTTCACCTGGAGCCAGATCAGACAAGAAACCG 493886 30 100.0 37 .............................. TTGATAGGACTGATAATTGATGCAACAGTATGGGTGT 493953 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 18 30 99.4 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : AATGATTTCATAGAAGAAACAAATACCGGAAGTTTCGAACCTTCCGCCATGTGTTTCTCCCACGGTTTGTAACCGTAATAGAACTCGGGATAACCGAGAATGTACCTATCTGGTTCTTTTGGAGAAAGATTTTGAATGTCCGCGTCAAAAGTCACCCTCTCACCGTCGAATCTCATGGCCACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATATTGTTCCATACAAAATCCGATGTTCCCGGCTTTGTCATCAGTATCACCACTATCACCTCCAGAGAACATCTTATTATGAAAACGTTTACATTCAAAATATGAAAATTTGCAAATAGAACTAATTACACCCGAAAATAAAAAAAGCAGGGAAATAATCCCTGCTTTTCTCTTTTAGTCGAATCTTTGAACGCTTGTTCGGGATGGGTTTCTATACCTCTAAAGAACTGGCTCTCTGTATCCCAGCTTCGACTCAAACGAAAACG # Right flank : CCCATTGAGTTCAGAATAAATTATACCACAAACACAAACTGAAAGCAAGATGTTTTTTGAACTTCCATATACTCATTTTCCATAAACGATTCTAACACACAAGGGGGTGTTTTCAAGAACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAGAGAGAGAATTCAAGGCAAAAACAAAAGATTAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTGGGCAAAAATCGATTAGTTCCACATTTCACAAATAGATGAAAGAAGGTTTCCCTCAAAGAGTTAGAAGTTAACTGTAAGATGTACGAATTTCTGCTACTTATACATCATCATTCACCACAAATTCTCTTCATATTGTCTTGTTTTATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAATTTTTTCGTTACTGGTAATTGCATACTCTGTATCGACCTTCTGATGCTAAATACATACAACACCCACTTTGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 4 641302-642331 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000001.1 Thermotoga sp. 38H-to contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 641302 30 83.3 35 C...T...............GG......T. TCTTCTTGATAGCCTTGTAGTTGTCTGTGGTCATG 641367 30 96.7 37 ....................G......... TTGTTTTTGGCATGCTGGCGCTGGCGCTGGCGGGCGC 641434 30 96.7 37 ....................G......... CAAGCCGAATTGGAAATGGAACGATGAAACAGAAGCT 641501 30 100.0 36 .............................. GTTCTCTCAATGTCACGTCTCATCACCTCTTCTTCG 641567 30 100.0 36 .............................. CTTTTACAACATGAAAGTTGTCGCAAAAGAAAGCGG 641633 30 100.0 36 .............................. GAGCAGCTTCTTCACAAGAAAAAACAGAATGGGACA 641699 30 100.0 37 .............................. CGTTCGAGTGTATCCTCGAGCCCAGCGAGTCGAGTGA 641766 30 100.0 37 .............................. TCAGGAGCATTTGTCTCGCAAGATCCGCTGACTGAAG 641833 30 100.0 37 .............................. GAGACAGAAAAGAGGTATTCTACGAAGAGTTTTCACA 641900 30 100.0 37 .............................. ATGGTCAAGCGAGATGTGGATACGATGTGGAAAGAGA 641967 30 100.0 37 .............................. GCTCCATAATCTTTTACGTTTACCCATTCCTGACCCT 642034 30 100.0 39 .............................. GATACATCTACCTGATGGACGTTACAAGTTTCGACGAGT 642103 30 100.0 35 .............................. ACTGGTTGAAATACAACTGGACGAACTCCCCAAAG 642168 30 100.0 37 .............................. TGTTTACGCTGTTCAGGGTTGAGTCTTTTGCTATGTT 642235 30 100.0 37 .............................. CAGTATACGGTACAGGCTACAAGTGAAGGACTTGATT 642302 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 98.5 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GTCAATAATCTCTTCTTTATTTCTCTCGAGGACATCTTTGATGTGAGATATCTTCGGATGGTCGAAAAAGCCTAAGAAGACATCAAAGGTCCTTTCCAGAGGGTCTCTTGAACCACTAGATTTGTCGAGAAATTTCATGGTGGGGGAAACAGAAGAGGAGAAATTCCCGCGCTGTTTTCTGTAGAGGAAGATTTTCGAGTTCTTACCCCCTGGTTTTTTCTCGATAGAAACAACATCCTTGAAAACCAAACCCTCTGAATTACTCTCAAGAAAGATAGCTATTCCTTCATCAGAAGGAACTTCTTCAGCGAAGTTTGAAAAAGAATCACCACCAATTTTCCCAAGATTGTATATCTTTTCAAGCACCCCTATCCCCCCTGCGGTGTTATCATTCACATTTTAACGTACACTTTCTGACAACAATCTAAATCCATAGTCATTGCACCTGAAAGGAAGTATTGAAACAGTATCGAAGATGAAGAAATCATACGGTTTGTGGG # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATTCTCCTTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTTAAAGCACTTACACGTAATCTATCTCCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAATCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAGTGCCATGTACACGCATCACCCACTTTGTGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 5 733187-732027 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNFZ01000001.1 Thermotoga sp. 38H-to contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 733186 30 100.0 36 .............................. AGAATTTTTTATAAGTTTAATCAGTCCAAGCTTCTG 733120 30 100.0 36 .............................. GCTCGTAGCCTACCATCGCTCTTGCTTCGTTCGGTG 733054 30 100.0 35 .............................. TGATCGCCAAAAAAGAATTTCGTATTCCTGAAGGA 732989 30 100.0 35 .............................. ATTGTATATACTGACAAAGGAGTTTTCTATGTTAA 732924 30 100.0 36 .............................. TGTGGTTTTCCCCACTCCTCGTCGGCCCGTGAGATA 732858 30 100.0 35 .............................. AAGGACAGGCAACTTCCTTCTGTCGACGTTCACCA 732793 30 100.0 36 .............................. TTGCAAACCTTTCGCCGGTTTCATCGTTGTAGAAAA 732727 30 100.0 36 .............................. TCAAACAGAACAATGAAAGCAAGGTATAGATGTGAA 732661 30 100.0 36 .............................. CAAGGTATATTTTCAGGATACACTGAACTTTTTCGG 732595 30 100.0 37 .............................. ACGTTGCGTTGAAGCAGGCGCACTATATGGTTATTTT 732528 30 100.0 42 .............................. TCGGAAAGCAGACAGGAGAAGTAGTTATAGACGTAGAAGAGT 732456 30 100.0 36 .............................. GGAGAATTCAGACGGAACATGGACGATCATAGCGAA 732390 30 100.0 37 .............................. ACCGCATTGAGGGGAACATCGCAGATCTCGAGGAAAG 732323 30 100.0 35 .............................. AAAACCATTCTTCGTGTAAGGAGGGATGATGATGG 732258 30 100.0 38 .............................. CTCGAACAGAACCTCAAGCTCGCACAGACAGAGATACC 732190 30 100.0 38 .............................. ACCTCTTTGGGATAAAAGACCTTGTGTGGCTTGATGAA 732122 30 100.0 36 .............................. CCGGAAAAGTCAGTCTATAAAATGTCAGAGTTGTGT 732056 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 18 30 100.0 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : CATAGACACGAAAAACAGACCCGACAGATTCGAAAAGCAAAGGAAAGACTCTCCCTCGAGGGAAAATCCGCTGGAAGCACAAATCGTGAAAGAGATTGTGGAAAAACTTCTTTCCATGGGAGTGAAAGAGGATTGGATCGGGATTATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGCTGATCGAAGAAGAGGTGGAAGTACACAGTGTAGACGGTTTCCAAGGAAGGGAAAAAGAGGTCGTCATCATTTCGTTTGTTCGCTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATTTGAGAAGGTTAAACGTTTCGCTCACACGAGCAAAAAGAAAGCTGATAGCGACGGGAGATTCGAGCACACTTTCTGTTCATCCAACTTACAGAAAATTCGTGGAATTTGTGAAAAAGAAAGGAACCTATGTGATCTTTTGACCTGAAGCATATAACAAAAAACATTCCCCACTCACGTGGGGATTTTTCCATTTAT # Right flank : CCATTGAGTTCAGAATAAATTATACCACAAACACAAACTGAAAGCAAGATGTTTTTTGAACTTCCATATACTCATTTTCCATAAACGATTCTAACACACAAGGGGGTGTTTTCAAGAACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAGAGAGAGAATTCAAGGCAAAAACAAAAGATTAATTACATCAACCTACGTCAGGGCATTTTGGGGTGTTTTGGGCAAAAATCGATTAGTTCCACATTTCACAAATAGATGAAAAAAGGTTTCCCTCAAAGAGTTAGAAGTTAACTGCAAGATGTATGAATTTCTGCTACTTACACATCATCATTCATAACAAATTCTCTTCATATTGTTTCGTCTTATCATTCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGACCTTCTGATGCTAAATACACACACCACCCACTTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //