Array 1 564-132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEP010000008.1 Enterococcus sp. BWB1-3 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 563 36 100.0 30 .................................... TTACCCCTTGCGGCAAGCGCCATCCATTTG 497 36 100.0 30 .................................... AAAGTGTCTGCGAAAGTCACAAGAGCGCAT 431 36 100.0 30 .................................... ACTTCGAATGACTGCAGAGAATCGTTTCTC 365 36 100.0 30 .................................... ATTTAAGAAATACATCATACCAGCTGAACT 299 36 100.0 30 .................................... TTGCATACTGTTTTTTTGACAACTTTCCAA 233 36 100.0 30 .................................... TCTGGAATTTGCGGGGTAAAACAAGCCCCA 167 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Left flank : AAGCTGAGTTCGACTATAAGCGATTTGATTGGATATGAACTATTAGAGCATGAACTAGATTTAGAGGAAGATGAAATAACTATTTTGGAACTATTTAAAGCTTTGGGGATCAAGATTGAAACTAAAAGCGATACATTTTTCGAGAAGTTGCTGGAAATTATGCAGATAACCAAATTTCTTTCTAAAAAGAAATTACTGGTTTTAGTCAATGTCTGTTCATTTTTAACGAAGGAAGAATTAGAAGAACTGACGCAGTATATCTCTTTATTGCATATTCAAGTGTTGTTTATTGAACCAAGAAAAGTTGATACGAAAAGTCAATATATATTAGATGAAGATTATTTTCTTTACCATGATGATAAGGTATAATAGTAAGTGAAGATATGTGATCCTTGAGAATTGAATAATTAAGTAAATAATTTTGAGGCATTTAAAGCAAGAATCTTGCTAGGATGAGTAGTGCGATTACGAAATTAAGTGGAAAAAATTTTTTCTACGAG # Right flank : CATGAAAGTTTGGAATGGCAACCCTTTTCTTGACAGTTTTTATAAGGTGTCCGATTTCAATTCGCGTTATTGTCCGATTGTCCTTGACAATGAGCCTCCTCGGATATGAGGAATACCGGCAGAAGCTAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 135016-132936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEP010000009.1 Enterococcus sp. BWB1-3 contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 135015 36 100.0 30 .................................... TTTTACAAAAATTGGAAGCTGGTTAGAGTA 134949 36 100.0 30 .................................... AAGATGCGCTTCCTGTTTGTTCCAAAGACT 134883 36 100.0 30 .................................... TGGGAATTTCGTTTGGTATAACAGTGAAGT 134817 36 100.0 30 .................................... GCTGGAGCAGATCCCATCGAAGCTTGAGCA 134751 36 100.0 30 .................................... CGGGGCTAGTTTGGGCGCTGCGATCGCTTC 134685 36 100.0 30 .................................... ATTTGTTAAAGGTAGGTGAAAACAGTTGGT 134619 36 100.0 30 .................................... CAATACAAAACCGAAACAAACAGCGTAGGA 134553 36 100.0 30 .................................... TGCAGTCATAACAGCCGCCCGCATTGCTGC 134487 36 100.0 30 .................................... CAGAAATAAGTTTCACTGGCTATTCTGGTG 134421 36 100.0 30 .................................... CAATCGATCTTGAACGTTTAACAGGTAACT 134355 36 100.0 30 .................................... AACATACACGACAAGCATTCCTTCCAATAT 134289 36 100.0 30 .................................... ATTGTTCGGTGTCGGAGATCAAGCCCGTAG 134223 36 100.0 30 .................................... TAGCGTATTCGTATGATTGCTTTCTTAACA 134157 36 100.0 30 .................................... AAAGGCAAGTGTCAATGCATCTGCGATATC 134091 36 100.0 30 .................................... ATCATGTTGAGCTAATGCGTGCAACATTGC 134025 36 100.0 30 .................................... GTCAGGCAATAAAAAGATATTGGACCGGCT 133959 36 100.0 30 .................................... GCTTTAATCATTTTCTCCATCTTCTCCTAA 133893 36 100.0 30 .................................... ATACTCGACAAGGTGGACGTTTCGGACGTA 133827 36 100.0 30 .................................... TATCTGGTGTATCTATAACGTGTATAGAAT 133761 36 100.0 30 .................................... TATAACATAGTGTACTATGCTTATATGGAT 133695 36 100.0 30 .................................... GAAGCGCCTGGTGTACGTGATCGGCTACCC 133629 36 100.0 30 .................................... AATTGGTATGTCAGCCACCATGAAGTTGTT 133563 36 100.0 30 .................................... AGACTTTTTCTGATTAAGTCATATTGTAAA 133497 36 100.0 30 .................................... AGACTTTTTCTGATTAAGTCATATTGTAAA 133431 36 100.0 29 .................................... ACTTGATTCATGTTTGAATCGAAAACGTT 133366 36 100.0 30 .................................... AGACTTTTTCTGATTAAGTCATATTGTAAA 133300 36 100.0 29 .................................... ACTTGATTCATGTTTGAATCGAAAACGTT 133235 36 100.0 30 .................................... TCCAACAAAACCGTCGCGCAGCCAGTTAAT 133169 36 100.0 30 .................................... CTGTTATAGAATTCTTAGTAAGTGTATTCA 133103 36 100.0 30 .................................... CGACATTGCCGCGCTGGTCCTCAGTCGGAT 133037 36 100.0 30 .................................... AATATCTGTTTTCTTGGTTAAATTAATACC 132971 36 94.4 0 ...............................C...T | ========== ====== ====== ====== ==================================== ============================== ================== 32 36 99.8 30 GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Left flank : AGCGCAGTATGTCCAGCTGCTAGAAAATGATACACCTTATAGATGGTTTGACGAGCATGTCCTAAGCGTTTAGCAACTTGTACAACAGGTTGCTGGGTATTGAAATAAGATTCTATTAAAACTAGTTCGTCTGTAGTAAGATGAGTATAGGTCATTTGTCTTCACTCCTTATAATTCTTTCGACGGAACTATTTTGAGTGTAGCACAAATGACTTATTTAGTTGTCTAGCTTAATTTTACTATCGGCGAAACTAAAAAGCCTTACTTGAAAGCCCATATAATCACTTGTTTTTTATTTGAACGTCCCTTTTTAATCAGAGCATTTTTTATGATGAAGATTATTTTCTTTACCATGATGATAAGGTATAATAGTAAGTGAAGGTATGTGATCCTTGAGAATTGAATAATTAAGTAAATAATTTTGAAGCATTCAAAGCAAGAATCTTGCTAGGATGAATAGTGCGATTACGAAATTAAGTGAAAAAAATTTTTTCTACGAG # Right flank : TAATACTATAGACGAATTTGCAAATGGATAATTTTTCTTCTTACTTATTTAGCATAAAAGTCCCTCCTGCAACTAAATAAGAGGGACGTGGGATTTTGAAACCAAAAATGAAATTTAATTTAAAACATCAACTAAACGTATTTTGGTAATATTTTTAAAGAATGACAAATCTTCAATAATCTCAGCATATGTTTTGTTATTAGGGATGGATATTCCATACACATTTTGGTATATTTTATAGTCTTCGTATATTTCGACGTTAAAAGTAACTTGATTTATTTCAATATTATTTTCATCAAAATATTGTATAAGGAATTCTTTAGTTTGCTGTCGATGCACATATTGTACTTCTAAGTTTTTTCTAGTGGGCACTTTTATAAATTTTGAAATGAATATGAGTGAAAAAAGAATTAATATAAAACTTAATGCAGCGATTTTATAATACCCCATACCTATCGCAATACCTAGTGCTGATACTGTCCACATAGTTGCAGCAGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 91907-91540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEP010000017.1 Enterococcus sp. BWB1-3 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 91906 36 100.0 30 .................................... ATCTGTACCGTAGTTTGCCCTGGTGGAATC 91840 36 100.0 30 .................................... CACAACATATGCCATGAAAACATACATCAT 91774 36 100.0 30 .................................... ATCCTAGCGTTCCTTTTGATTTTAATGGTT 91708 36 100.0 30 .................................... TGAAAATGGCTGCAGAGTTAGCGCCGAAGT 91642 36 100.0 30 .................................... TGTACTTCATTCCTTGCTTGTAGTCTTCAT 91576 36 94.4 0 ..............T....................T | C [91544] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Left flank : GTTGTTTAAATTCTTCGGTATAGGTTCTTCGTGCTCTTCTTGACATAAAGTGGTTCCTCCCAGTGTGTTTTCTTTTAGTTTACACACCTTATTTTTTATGTCTAGTTTAGTGTAGCCTATCCAGTTTATATGTTAGCTATCACGGA # Right flank : CCTGTTCAGCATGATAACCTTTCGTTGGGTATAGAAAAAGTACTCAAAGCTCGCAAGGTTCAAATGTTAAAAAATCAATCTGTTCTAACCTTCGTCAGATAATTCTGTGACAGGAGTATTAGTTGCAATTGTATTTCTAACTTCGCTATCCATAGCTCTTATCCCCTCTTCTAACTCTTCATGATGATCAAGTATGTTTAATGGATTCCCCCCTCTGATTATTTTCTCAGGGATATCTTTTTTGAAATGATCTTTATAATCTTGTTTTAATATTTCAATTTTTTGGAACAGCATATCTGCTTTAGCCATTTTGCTATCTCTCTTTCAAAGTCATACCAATGATTAAATTAAAAAATTCCAGTTCACTATCTATTTTCCTGTAATACATAGTTCCTCCATCTCCAACTCTAGCTGACTGCCGTTCGGCACAATATATTTTCAAGCCCATGTTTAGAACCCCACTAGCTTTGGCATATTATTTTCCAATGTGTAGGCTTATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGTCTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 93814-94437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEP010000007.1 Enterococcus sp. BWB1-3 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 93814 30 100.0 36 .............................. TTGGATAAATGAATGGGTGAAAGAACTTAAAGGGCA 93880 30 100.0 36 .............................. ATAATTGGAATGATGTAATAGACCTAAAAGCTGATG 93946 30 100.0 35 .............................. ACAACAGAAATTTCTAAAACGGCACAAGTTTTAGC 94011 30 100.0 36 .............................. CAGACCCAGCAATAATGTAACCGAATGTTGATAAAA 94077 30 100.0 35 .............................. ATTCTAAAACTGGCGGTAAGGTATATTACGCTTTT 94142 30 100.0 37 .............................. GATTTTAAAAATCAGATACAAGCGTTAACAGTTACAC 94209 30 100.0 36 .............................. GCTAGATCATGCAACTGAAAATGCCGAATATGTAGA 94275 30 100.0 36 .............................. ATAAAGCGGAATTAATGTTATATATGCGTGATTTCT 94341 30 100.0 36 .............................. TCCGAATTCATGTTCTGGTTGATTGTTCATATTTTG 94407 30 83.3 0 ........T........A..A...T....A | T [94434] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.3 36 GTTTTAATCTAAACAGAGTGTAATGTAAAT # Left flank : ATGAAGAAGATTATGAAGGGATTACCAGAGATTTTGTGAAGGAAGTTGAAAAGCTGACAGATCAGGATATCGATGGTGATGGAAAAATTGCCGGAGGAGAAAAAGTTAAAAAATAACCTTTGATTTTAGGAAGCATTATTATTATATGAAATATAAGCTGAAATTTAATGAAAATCGCCAGTCGACTGCCATGGTGCGGTCGTACTGCGCACTTTCAGAAGAAGTGCTGATTTTCTTGAATTTCAGCTTTTTTGTTCTGTTAGAAAGGGAGATAATATTGGGAATGCTCGAGCGGCAGGATAAAAAAATTGGTTTACGATTGAAGCTGTCGACCTTTAATACTGTAGAAAAGGTGGGCGATCGACAGTTAATAGAAACATTGCTAGCATTGACTTTTGAGTAATAACTACAGTAAAATGGAGAGGTCAAAGCGAGAAAGTTAGCTGATCGACAGAACAGGCGCTGAAAATCCTTATGTGGTAAGGGGAAAATAGGTACCC # Right flank : AAGTCATGGTTATTTCTGAAACCATGTTTTTTTTTGAAATTCCCAATGTATCTTTGACCATACAATATCACTAGGTCACTGCGTATTCTAATGTTCTATTTTACTTTCCTGTTTTAAACGAAACATGATTGCTTTTCCTGCTGATTTTCATTAGAATGGAACAAGTGAGAAGAGGAAGGAACGAATTATGAAAACACAACCAGTACAGAAGAACGAAACAATTGAAGTAGAAATTATTGATTTAACTCATGAAGGCTTAGGTGTCGGTAAAGTGGATGGTTATCCGCTTTTCATAGAAAACAGCCTTCCTGGAGAAAAGGTAAAAATTCTGGTTTTAAAGGCTGGAACTAAATTTGGCTATGGAAAAGTTCTGGAACGTCTGACGGACAGTCCTGATAGAGTCATGCTGACTGACGAAAGTCTTTTGAGAACAGGCATTGCTCCGCTTCAGCATATGACTTATGAAGCTCAGCTTCTATTTAAACAAAAACAAGTCGAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTAAACAGAGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 108157-108516 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOEP010000007.1 Enterococcus sp. BWB1-3 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 108157 30 100.0 37 .............................. TTTACAGGTATTCGGGATCTGGAGAAGCAGTCATTCC 108224 30 100.0 36 .............................. AACGTTACACACATGATGATCGAGGCGAACTACTCG 108290 30 100.0 35 .............................. ATGAATGCCTTCTTACCATAAACAAGAACGTAGCC 108355 30 100.0 36 .............................. CTTTGTGGCGAATCTATCGAACTTGCTATTGATCAC 108421 30 100.0 36 .............................. CTTGGTAAATATGAAGTTGAAGAAATCAAGGCCAGT 108487 30 80.0 0 .G........G....A...A....T.G... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTTTTAATCTAAACAGAGTGTAATGTAAAT # Left flank : AGACTTCTCAAAAATGGAAGATTTCCTACGCAGTCAGGTACGTTTCTCAGCATTGCGTAATATAAAACAGGATGAAATTGAAGTGGAACAAATGCTTCATCAGACAGTTACGGACATGGAAGAACGCTCAGAAAGCTATACTCAGTTATTGAAGAAATAAGAATTGGAGATATTGATTAAAAAGAAATACTTACAATCCTATTTGAAGTTCTTCAACAGTAAGGAAAATGATAAGTAGTAAATGGTCTGTCGATCTCCGATAGCGCGTAAATACAGGGAGATCGACAGACTTTTCTTTGAAATAGAATGTTTTGAATAGAAAACGCTGATTTTCCGGAGTTTAAGGGTCAGAAATTTAATTATGGAAAAAGAAATATCTTTTCAGCAAATTGACTTTTGTAATATATGTAGTTTAAAATGTAAGGATAGAATGATTCAGAAAAAGAGATCGACAGAATAGCCGCTAGAAACCCTTATTTAGCAAGAGGTGAAATCGGGTG # Right flank : TTTTGCTAAAAAAATAGAAAATGTCTCTTACGGATTTGTCTTAATCTAAACAGAGTGTTTTTCTCATAAGCTAATATATTGATTCAGCTCAAATAAAAAAAGCCAAGACGCAGTTTGTCTTAGCTTTATATAATCTATTTCTTTTTTGTAAATCCCTGTGCTTCAAAATCTTCAACAGTTTTTTTGAAGCTGACATTATCTGAGTCGTCACTTACTGCAAGTCCAAGTGTGGAAGCATCTGCTTTTTCAAGGTCAACGGACATTGTAAGTAGTAATGTTGTATCTGTAAATTTCATGTCCATAGAAGTACCTTCTCCATCTTCATAAGCCTCGTACATAGAACGAACTCTTTCTTCAAGAGCTTCCTTGGTTTCATCATCAATGAAATATCCATCCTCATACCCAAAATAAGAGTACGGATAGTCCATTTTTTGGTCAACTTTGATCAACTTATCTCCTTCATGTGTGAAGATCGCTTCCATAGTTGCACCCTCAATCTC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTAAACAGAGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //