Array 1 3937586-3933777 **** Predicted by CRISPRDetect 2.4 *** >NC_018691.1 Alcanivorax dieselolei B5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3937585 28 100.0 32 ............................ ACCGAAGCCATTGGATGGATGAATGATCCAGA 3937525 28 100.0 32 ............................ AGGTAGATGGACTGCATGCCCGGCTCTTTGTT 3937465 28 100.0 32 ............................ ACACCGGCAGCGTGACTCGCGCCTACGCTGAG 3937405 28 100.0 32 ............................ TACGAGGTTTCCACCCTGCACCTGGAATGGAG 3937345 28 100.0 32 ............................ AAGGCGATCCGGGAAACGGATCTGGAAGAGTC 3937285 28 100.0 32 ............................ CTGCCCGGTGATCTCAATCCGGTCGCCTGGAT 3937225 28 100.0 32 ............................ GGTCGTCGCCCAGTGCCATCCAAAGCCCGCCA 3937165 28 100.0 32 ............................ ATTCAGTGCGTCCAGATTCAGCGTGCATTCCT 3937105 28 100.0 32 ............................ GTTGGCTACCTTTGGGAATGTACGCCGATCAA 3937045 28 100.0 32 ............................ TTGCCCCCGGCGCCCAGTACAGGGCAGGGCAT 3936985 28 100.0 32 ............................ GACAAGGTCGGCCGACAGGCGACGGGATGGAA 3936925 28 100.0 32 ............................ TGGTTGGATTCGCCGACCCGTTGCACGGTGAA 3936865 28 100.0 32 ............................ AGAGCAATTACAGTTCCACGCGCTCAGGCCTG 3936805 28 100.0 32 ............................ AGTTGGTTATCAATCATGTGAAGCACCCGCCA 3936745 28 100.0 32 ............................ CAATCCGCCGGCCACACCTGCGCACCGGCAGT 3936685 28 100.0 32 ............................ AAACATGCGTCGTGGCCTTCGGGCGTATCGTG 3936625 28 100.0 32 ............................ ACTGAGGATGCTGGCGACCCGGTCGTGCTGAA 3936565 28 100.0 32 ............................ ACCAGACGCATGCCACGGAACTCGCGGGCCCC 3936505 28 100.0 32 ............................ AGCATCTGGACCCGCTGCCCCGTGCAGATGAT 3936445 28 100.0 32 ............................ AGATTCGACGGTGAGAAAATCAGCAACGGCAA 3936385 28 100.0 32 ............................ ATAACGTCGTCCAGCAGTCCGGCTTTGTGGAG 3936325 28 100.0 32 ............................ AACGACAATGAGCCGCCGCCATCGGGCGACTA 3936265 28 100.0 32 ............................ AAATCACATCGGACTCAGTCTGCGCAGCAGCA 3936205 28 100.0 32 ............................ TCTAGGGGATCGTTCCTTGAATCTATCCTTGT 3936145 28 100.0 32 ............................ AGAATTCTATCGCCAGGTACTGGCGTAGCCCT 3936085 28 100.0 32 ............................ AAGGAAATGCGCGACCGCCTGCAGCATCACGC 3936025 28 100.0 32 ............................ ATCCTGCCCCGTGGGCGGCACGTAGATGCCCA 3935965 28 100.0 32 ............................ ATGGCCGAACGCTCGCCTGAGGTGCCATCCGA 3935905 28 100.0 32 ............................ ACTGACGACGGATTCTGGAGCGTCATCGAGGG 3935845 28 100.0 32 ............................ TGGAACACCTGGTCGAACTGGTTCTCGTCCAG 3935785 28 100.0 32 ............................ GTACAGCAGGCGCGGTTTCGGGAGCGACTTCT 3935725 28 100.0 32 ............................ CACCACCGATCCAGTAGGACCGACCAAGGCCC 3935665 28 100.0 32 ............................ AGGAGCTGACGGACGATGTGCACCATGATCGT 3935605 28 100.0 32 ............................ ACCTTGCGGCCCGCCAGCGCGGACCAGTCGGC 3935545 28 100.0 32 ............................ CACAACGCACTTCACCGTCTCCGACCTATGCC 3935485 28 100.0 32 ............................ TGGAAGGGGCCTACCTGGAAGGGGCCGACCTG 3935425 28 100.0 32 ............................ AGGATATCCGTGCGCGGGTTGCGCGGCACATA 3935365 28 100.0 32 ............................ TCATTGGGCTCTTGTTCTGCGCCGTGCAGGTC 3935305 28 100.0 32 ............................ TGAACGATGCCAGCTCCAAATTCTGACCAGGA 3935245 28 100.0 32 ............................ TGTTCCCGCGACAAAGAAGGGATCTCCTTCAA 3935185 28 100.0 32 ............................ GTCGAGCCATGAACCGACGCTCGCACCCCATA 3935125 28 100.0 32 ............................ AATGGCGGGCACGCATGGGGCTGAGCCAACGG 3935065 28 100.0 32 ............................ GATACAGGAGAGTAAAGTCATCGCCTGTTCCC 3935005 28 100.0 32 ............................ ACCCGCCCCGGCGGAACCGGGATTCCGAAAGG 3934945 28 100.0 33 ............................ CCGCGACGGTGGCTTTCGTGCTGGTCGCCGGCT 3934884 28 96.4 32 ................A........... ACGGGTACAGGCCCTCTGGCGAAGGGACTTGG 3934824 28 100.0 32 ............................ TTAAGGTAGACCGAAAGCAGGAAAAGCCCTCT 3934764 28 100.0 32 ............................ CACTGGTGGAATGGGGTAAGCTGATCGGGGTC 3934704 28 100.0 32 ............................ GCCTACTGGCCCGGCACCGTCCGGGCTTTTTT 3934644 28 100.0 32 ............................ ACTACGTGTCCGGTGTATGGGACGGGCAGGGG 3934584 28 100.0 32 ............................ TTCTTGATAAAGAGTTTCGGCGGCAACGATAA 3934524 28 100.0 32 ............................ AGAGCAAGGCGGCATCTATGCCGGCCTCATGC 3934464 28 100.0 32 ............................ TCGGGGAGAGTCGGCGTTCCCACCCCTATAAG 3934404 28 100.0 32 ............................ TATCAGCCGATTGTGTTGCTGCGGCGGTCCAC 3934344 28 100.0 32 ............................ AGCATGTGACGCTCCAGCGCCATCGCTTCAAT 3934284 28 100.0 32 ............................ AGAAGCCGGACGCACGGCGCGAATTTTTACCT 3934224 28 100.0 32 ............................ ATCGGCGCCAAGTCGGCGCAAAAGTCCCGTAT 3934164 28 100.0 32 ............................ TCACAGCGCTGACACCAAAGGCCGCCAACAAG 3934104 28 100.0 32 ............................ ACGCAGGATGACGGTGTCACCCTGGTGGATAT 3934044 28 100.0 32 ............................ ACTCGCTTCGGCCAAGACGCCACCACCAAGTA 3933984 28 100.0 32 ............................ AGGGGCCGAGACGATGTTGCAGGCCGTTTTCG 3933924 28 100.0 32 ............................ ATGTCCGCGCGGCGCGACTTGACGTTCGGCGC 3933864 28 100.0 32 ............................ CAGCGGTTGATGATCCCGCGCACCGTGTACAG 3933804 28 89.3 0 .............T.......C..A... | ========== ====== ====== ====== ============================ ================================= ================== 64 28 99.8 32 GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Left flank : CGGCTCTGGATCATTTAATGAGTCAAGATTGTCTGGCCGGCATGCGTGACCATATCCAAATGACAGGGTTGGCTCCGGTGCCAGGCAATGCCAAGCATCGTGTGGTCCGGCGCCGCCAATTCAAGACCAATGCGGAACGTCTCCGGCGTCGCCGGGCGCGGCGTCACGAGGAAACTCTGGAACAGGCTCGGGAGCGAATCCCAGACACGGTGGAGCGCAAGGTTGATTTACCCTACGTGACGCTGCGTAGCCAGAGCACGGGTCAGGACTTCTGCCTGTTTATAGAGCACGGTGACCTGCAGGCACATCCGGTTACGGGCCGCTTCAGCCGCTATGGCCTCAGCCCTACCGCAACGATACCGTGGTTCTGACCCTTTTTTTGATTCCAATTAATACTTTCCGAAAATCAATAACTTACGTCACGCTCCAAAATTTGGGGTGTGGCGCTTCTTTTTAGCCTTGTTCTTTAAAAATCAGGGAGTTAGATTCGTTTGGTTCTA # Right flank : TACTGGATCGAGGGTCGCTTCTGGCATGCCCTTCGCCGCTGAGGCGACCTCCCTCAGCGGCTCGTGGTGCCTTAGCTAACGATACCGCGCCAGTTCCAGCCGTCCTATCTGGTTGCGGTGCACTTCGTCGGGGCCGTCGGCCAGGCGCAGCATGCGGGCGTTGGCGTAGGCTTTGGCGAGGCCGAAGTCGTTGGTGACGCCGCCGCCGCCGTGGGCCTGGATGGCCCAGTCAATGACACGGGCGGCCATGTTGGGGGCGGCCACTTTGATCATGGCGATTTCCTTGCGCGCCACTTTGTTGCCGACGGTGTCCATCATATGGGCGGCGTTGAGCACCAGCAGCCGGGTCTGATCGATGAGGATGCGGGATTCGGCGATGCGTTCCAGGGTCACGGTTTGTTCCGCCACCGGTTTGCCGAAGGCGACCCGCTCCTGGGTGCGTTTGCACATTTTCTCCAGCGCCCGTTCCGCCAGGCCGATCAGACGCATGCAGTGGTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //