Array 1 5209-6639 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXC01000029.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT645TT NODE_29_length_57781_cov_28.9514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5209 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 5270 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 5331 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 5392 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 5453 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 5514 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 5575 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 5636 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 5697 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 5758 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 5819 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 5880 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 5941 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 6002 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 6063 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 6124 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 6185 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 6246 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 6307 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 6368 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 6429 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 6490 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 6551 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 6612 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23402-25505 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXC01000029.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT645TT NODE_29_length_57781_cov_28.9514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23402 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 23463 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 23524 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 23585 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 23646 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 23707 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 23768 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 23829 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 23890 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 23951 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 24012 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 24073 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 24134 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 24195 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 24256 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 24317 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 24378 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 24439 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 24500 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 24561 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 24622 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 24683 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 24744 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 24805 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 24866 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 24927 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 24988 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 25049 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 25110 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 25171 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 25232 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 25293 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 25354 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 25415 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 25476 29 96.6 0 ............T................ | A [25503] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //