Array 1 489113-488297 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSUW010000001.1 Staphylococcus hominis strain K24 NODE_1_length_538016_cov_536.674335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 489112 36 100.0 34 .................................... ATTCATTTTCTACACCCCTTAAAAAATATAATTT 489042 36 100.0 34 .................................... TTTTCTTTTTGAACAGCTTTTCTAAATGCGTCTT 488972 36 100.0 37 .................................... TCTAATAAGAAGTTCATTAACTCTGATTGTACTTGTT 488899 36 83.3 35 .A....C...C......T.A..G............. GTATAAATCCTCAATTAGTTTAATGTATTTTGTCA 488828 36 86.1 36 .A....C...C........A..G............. ATAAGCTACCTAGAAACTTAGTCGTTAGGCATTTAT AT [488810] 488754 36 91.7 36 ......C...C......G.................. GTTGTGAATGGTTGGCTAGTATATTTGAAGTTCATT 488682 36 88.9 30 ..........C...T..G.......A.......... TTATCTTTACCATATGTTTGTTCGATTGTA 488616 36 91.7 36 .............T...T.............G.... CTTAAAATGTTCAAACATCATTGTTTGAATGTGTGG 488544 36 80.6 33 ........C.C......T.AC.G....A........ AATTTATGATTGTCGTCTGTTGTAATGTCGTAA 488475 36 88.9 36 ....A...C.C......G.................. TGAAATAATCACGACCACGTCCCATGTGTGCTCTAC 488403 36 88.9 35 .A....C...C......G.................. TTCATCTCTTTGCTTACGGAAACTGTCACGTTCTC 488332 36 77.8 0 ...T..C...C......T.A..G.......A....A | ========== ====== ====== ====== ==================================== ===================================== ================== 12 36 89.8 35 ATTCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Left flank : AAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTATGATAAAGAAACATTAGATTTTTTAGAAAAAAATATCAACATTGTTGACTATAAATTGAAAAGTACGCGGTTTAATTTGGAGAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCTTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTACATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCTA # Right flank : CTCATCTTGATGATCTCAATTGGCTTGGTTAAAATGAAATCGATAACCCCCGTAGAATAGAGAATAAGTATTAAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCAATTTCTAAATAAGCAGAAACAAAAATAACTTTCATACAAATAATTTCTTTATGATTAAGTTGGAATTAGAAAATCAATACGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGGGATTGGAGGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAACAAAAAATAGGAATTAAATTTGAAATAAGATATAAAACAAATATTTTTATCATAATTACTTTAGTAAGTGCTTTATTATTTAGTAGGATAGAAACACATCAAACATAAGTGGTTGAAAGTAAAGTAACGCCTAATAATGCTGCAAATA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 498581-497833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSUW010000001.1 Staphylococcus hominis strain K24 NODE_1_length_538016_cov_536.674335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 498580 36 100.0 36 .................................... TTGTGTACTTTTGTAATAGTAACATCTTTATTTACA 498508 36 100.0 37 .................................... AATATTTTTTAACTTCATTATTAATAATGCTAAATAA 498435 36 100.0 34 .................................... CAAGTTTAATATAATAGTATCATCATTATTATAT 498365 36 100.0 35 .................................... TTCTGAATGGCTCGATTGCGAACAGTACGCCATTT 498294 36 100.0 33 .................................... ATTGAAAGCCTAATGGTAATTACATTGAGACGA 498225 36 100.0 36 .................................... ATAAAGATACTTATTATATCTATGTTGTTGGTCGTA 498153 36 100.0 36 .................................... ACTTCTGTACTTACTACATTATTTTTAATTACTGTC 498081 36 100.0 35 .................................... TTTATCATTAATTAAACTAGTTCTGTTAAATTTGT 498010 36 100.0 35 .................................... TAATTCCTTTTTAGTTTCCGTTCTGAATGTTTGTT 497939 36 100.0 36 .................................... GCTTGTGTGATTGCTGTAATTTCCGTAAATGTTTGT 497867 35 86.1 0 ..........T...........C.......-...GT | ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 98.7 35 GATCGATAACAACCCCGAAGAATAGGGGACGAGAAC # Left flank : TGAGCAATCGATTTAATAATTCTACCGGCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAGAGTTTAATAAATATCAAGTCAAGGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAATATAGAAGTATATTTTTTACTTTCCTGAACAGTAGTTATTAAATTTATCTCTTACTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAATACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : GTAAATTTAATAACACTCTAAAAAATTGTAAATTTTTAATGAAATATGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACAACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.50,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //