Array 1 28173-27148 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAAADB010000010.1 Streptococcus agalactiae strain iGBS132 NODE_10_length_63536_cov_51.4544, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     28172	    36	 100.0	    29	....................................	GACAGATGAAACAAAAAAAGTCTACCTAA 	
     28107	    36	 100.0	    30	....................................	ATGATATCATCGGCTTCATAATGTTCCAAT	
     28041	    36	 100.0	    30	....................................	TTGACCTGTTTCATTCTCTGGAACTTGTTG	
     27975	    36	 100.0	    30	....................................	AATTTGATTTTTTAGCATAGTATAGCTTGT	
     27909	    36	 100.0	    30	....................................	TGAATTCCACGCCACCAAGTAAACCTGTGA	
     27843	    36	 100.0	    30	....................................	ACAAGAAACAAACAGCCTTGATGACTTAAT	
     27777	    36	 100.0	    30	....................................	GGGTCCAAATCAGCAATCTATGCTAAAAAT	
     27711	    36	 100.0	    30	....................................	CAACCCTATGTTTGATAATATTTTAGACGT	
     27645	    36	 100.0	    30	....................................	AAGTGAAGTTGAATTTTATTTGAGATACTA	
     27579	    36	 100.0	    30	....................................	AAGTGCCACAGTTTGTGGCTGATTGGATTG	
     27513	    36	 100.0	    30	....................................	CATTCAAGGACTACCCTCAACAGTAACTCT	
     27447	    36	 100.0	    30	....................................	TTCTATCTTCTGAAGATATTTCACAAGTGA	
     27381	    36	 100.0	    30	....................................	TCAGCGAGATGCTCTAAGTAAGCATGTTGA	
     27315	    36	 100.0	    30	....................................	TCAGCGAGATGCTCTAAGTAAGCATGTTGA	
     27249	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC	
     27183	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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