Array 1 813722-811312 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034819.1 Salmonella sp. SSDFZ54 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 813721 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 813660 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 813599 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 813538 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 813477 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 813416 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 813355 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 813294 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 813233 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 813172 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 813111 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 813050 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 812989 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 812928 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 812867 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 812806 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 812745 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 812684 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 812623 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 812562 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 812501 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 812440 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 812379 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 812318 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 812257 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 812196 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 812135 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 812073 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 812012 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 811951 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 811890 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 811829 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 811768 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 811707 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 811646 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 811585 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 811524 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 811463 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 811402 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 811341 29 100.0 0 ............................. | A [811314] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 831454-830267 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034819.1 Salmonella sp. SSDFZ54 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 831453 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 831392 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 831331 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 831270 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 831209 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 831148 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 831087 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 831026 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 830965 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 830904 29 100.0 32 ............................. ATCCCGTGCTCTATTAAAATCTTTGATTGCGT 830843 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 830782 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 830721 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 830660 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 830599 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 830538 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 830477 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 830416 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 830355 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 830294 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //