Array 1 71-2545 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRK01000033.1 Bifidobacterium longum subsp. longum strain MCC10060 contig0033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 71 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 135 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 199 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 263 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 327 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 391 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 455 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 519 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 583 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 647 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 712 36 100.0 28 .................................... CGTCTCGTGTTCTGGGCCCTCGTGTTCG 776 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 840 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 904 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 968 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 1032 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 1097 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 1161 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 1225 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 1289 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 1354 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAGC 1419 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 1483 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 1547 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 1612 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 1676 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 1740 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 1804 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 1868 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 1932 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 1997 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 2061 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 2125 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 2190 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 2254 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 2318 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 2382 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 2446 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 2510 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 39 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : CAATCTAACGGGTGTTGCACTTTCATTTAGACAACGGGCAGCAGCGTGAACGCAAGGCCATCGCATATGTC # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCTCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 2177-2728 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHRK01000041.1 Bifidobacterium longum subsp. longum strain MCC10060 contig0041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2177 36 100.0 28 .................................... CTATATCAGGTTCCCCGTCACGGACGAA 2241 36 100.0 29 .................................... GTTGTATCCGGCCCTAATATTTTACGAAA 2306 36 100.0 29 .................................... TTACAATTTATGATTATGTGTGGTGACTC 2371 36 100.0 29 .................................... TTCCATGATTCCGGGATGTAGGCCACGAA 2436 36 100.0 28 .................................... AGACGGAAGAGAAGGTGACGCCCGAGAT 2500 36 100.0 29 .................................... GAACCTGTTGGCCTGGTCCCAGTCGCTCG 2565 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 2629 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 2693 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 100.0 29 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCGATGTCTATTTAGAAGTGCAACACCCTTGTTGGTCCTGTAATTCTAACAGTTCGTCGGCGAACGCCTCGGCGGGCGTGCGGTAGCCGAGCACGCGCATGGGGCGGTTGTTGATCTCGTCGACGATCTCCCTGACCTCCTTTGCCATGTCCATCCGGATCTCGCAGCGTTTGGGCAGATACCGGCGGATCATGCCGTTGCGGTTCTCGTTGCTTCCCCGCTGCCAGCTGGAGTACGGGTCGGCGAAGTACGTGGCCATGCCCAGCCCGTCGCGCAGCCTTTCGTGGTGGGCGAACTCGGTGCCGTTGTCGTGCGTGACGCTGACGCGCGCGCCGGCCGGCAGCGGCGAGAACATGTCCAGCTGCGCCCCGACGCTCTCGCCGGCGGTCTTGTCCGGAACGATGCGGGCCATGAGGAACCTGGTCCTCCTCTCCACCTCGGTGTGCAGGTTGCATCCCACTCCGATGACGCTGTCGGCCTCCCAATGGCCGAACGCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //