Array 1 10257-7466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOI010000011.1 Vibrio cholerae strain C4C.1 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10256 28 100.0 32 ............................ AACAGGTGACAGGGTAGCGCCTCAGCAACTGT 10196 28 100.0 32 ............................ CTTTACCCGGCTCTTGGCCTAGTGGTTGGCCT 10136 28 100.0 32 ............................ GCAAAGCGCTTACAGCTGCTATCGCGGGTTCT 10076 28 100.0 32 ............................ TTCTGGACGGATGACGCGAAGCCAGCCAAAAA 10016 28 100.0 32 ............................ TTCAGCACTGATTTCTGCGGCTTCAAGGCGTG 9956 28 100.0 32 ............................ ACTCTCTTAGCTCACTCGGCAACGATGGCAAG 9896 28 100.0 32 ............................ CAAATAAGGCAGCGCGGGATAAGGGCAAAGGT 9836 28 100.0 32 ............................ ATCAGAGACTAAATCTAAAGTGTTTAACGACA 9776 28 100.0 32 ............................ AATCGGCACGGATGCGTACTCTTTATTGTACA 9716 28 100.0 32 ............................ TTATGCGAATCCGGGGATGGACGCACCTTGAG 9656 28 100.0 32 ............................ ATGATCGTATTGTTGAACGTCCATACCGAGGC 9596 28 100.0 32 ............................ TCTGCCAACCATTAATAAACTCTTCATCTACT 9536 28 100.0 32 ............................ ATACCTGTAAATTCCAACCCAGCACCATACCG 9476 28 100.0 32 ............................ ACGCGGGTCTTTACAGTGCGGGCGGAAATGCA 9416 28 100.0 32 ............................ GATTGGGATGCCGGTTCCGGTTGGTTCGATGA 9356 28 100.0 32 ............................ GCTAGTGCCATTGCCGCGATCCCACGCTTCGC 9296 28 100.0 32 ............................ AGCAACCAAGCAAAGTGATTCTTCTTTGTTGA 9236 28 100.0 32 ............................ ACTGAAAAGTTTATTGCTAATAGCATAGATGA 9176 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 9116 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 9056 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 8996 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 8936 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 8876 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 8816 28 100.0 32 ............................ ATGTTTTTTATGTTTGGGGATCCTGTTCGCCA 8756 28 100.0 32 ............................ ATATTGGCGCCTTTAGAGTTCTCCCAACCTTT 8696 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 8636 28 100.0 33 ............................ CCTAGGGATTCCATCAGCCACGCGCTGCTCAAT 8575 28 100.0 33 ............................ AGTAAATGGGTTTTTCATCGAGCAGCTTTAACA 8514 28 100.0 32 ............................ GCTCAAGAAAAAAGAGCGCGAGCAAGTCCGTG 8454 28 100.0 32 ............................ ATTACCACGATCCCATTGCTCGGAACCCCATT 8394 28 100.0 32 ............................ GTGAGGATGACCCGATATGCACACAGCTCCGC 8334 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 8274 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 8214 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 8154 28 100.0 32 ............................ GATCACGTTTGCTTTGGTTGTGTTCTCGTCTT 8094 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 8034 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 7974 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 7914 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 7854 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 7794 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 7734 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 7674 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 7614 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 7553 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 7493 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCATTGTGCGCTTTGCCGTTTATTTACTTGTATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAGAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270-1377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOI010000020.1 Vibrio cholerae strain C4C.1 Scaffold20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 270 28 100.0 32 ............................ ACCTGAACCACTGCCGGAACAAAAAACTAAGC 330 28 100.0 32 ............................ AGTTTGTCAGTAAAAAGCTCAGATCCGTAATT 390 28 100.0 32 ............................ TATTAGATGATTTATATCATTTTCTCGAATAG 450 28 100.0 32 ............................ GCAGAAGGAAACCCCGCAGACAGACTTTTTTC 510 28 100.0 32 ............................ CAGTTAATTGCTCTTCCTCAAGCTTGAGAACG 570 28 100.0 32 ............................ ATCGACACCTACAGTTTGTCAGGAAGCATTTT 630 28 100.0 32 ............................ GTCCTGAAGTAAAGGATCCTTTCGAAAATATT 690 28 100.0 32 ............................ AGCGTCCGCCATTTGTGAAGGAGTCAAAAAAA 750 28 100.0 32 ............................ TCTCAAAATCAAATGAAAAATGTTCGAGTTTC 810 28 100.0 32 ............................ TCGTTTCGATACCAAATCAGGTCAGGGTCAGT 870 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 930 28 100.0 32 ............................ TACAACTAACTTTTTAAGCTTCTTTGCTGCTT 990 28 100.0 32 ............................ CGTTGTGACGATGCGTCTCAAATCGAGCAACA 1050 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 1110 28 100.0 32 ............................ GTACCCGGCTCTGCCGCTGCTGCTATCACTTC 1170 28 100.0 32 ............................ ATATGCGCGACTTAGTATCTCTTCCTGACATT 1230 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACCAGCT 1290 28 100.0 32 ............................ ATCCGGCACAGTCGAAGAAATCGGCTGATTAA 1350 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTAGCAGTTGTTGTGTTTGAGTTTGGCGTTAATGCGTTGCCAGCCCCTTAGGCGGACGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTTTTCACATTGCAGGTAAGCATTTTTTAAGCTCAAGAAGTAACATATATGCACTAGAATCACTGAGTTGATATGGATTGAAATTGCTACTTGATGAGAATTTCAAGACGAGTGGTTTAGTTATGCTTGATATAGGAATGTATCCCATAGACCAGTCTTGAAAATCTCTGTTACGTATCTCTTGATAATCTAAGATAACAACCCTGTTGTGGCGGTGATCTTTTATGATGTTGTTGTACAAAAGATTAACTTTTTCTCTATCACCTTCTAAACATTGAAGAAAATATTCATTGTTAAAATAGAGTACGCCAGTTATATCTCGTTCAAAGTTATATTTTTTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 787-1834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHAOI010000046.1 Vibrio cholerae strain C4C.1 Scaffold46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 787 28 100.0 32 ............................ GTAAAGTGATTGCGCGTCCTCAAAACATTGCC 847 28 100.0 32 ............................ GGAACAAAAAACTAAGCCGAAAACCAAGTTTC 907 28 100.0 32 ............................ TCTTGAGGCTCACTTGCTTTATAGTTCCACTT 967 28 100.0 32 ............................ GAGCTTGAAAAGTCAGAGCTTGCGCGAACAAT 1027 28 100.0 32 ............................ AAAAAGCTCGTTTAAGGTCGGCACGGTTAAAA 1087 28 100.0 32 ............................ TGCTCCGTTTAAACAATTGTTTCCATTAGAAA 1147 28 100.0 32 ............................ TGAGTATGGCTTGGTCAAAAGAGCAGAAAAGA 1207 28 100.0 32 ............................ AAACATAACAAGCGGCCAGAAATAAAACTGAA 1267 28 100.0 32 ............................ TAAGAACCGCTGTGACATTCTTGGTGAACGTA 1327 28 100.0 32 ............................ TCCATGAGGGTGGCGAACTGGTCAACAGTAAT 1387 28 100.0 32 ............................ GTTAATAATTTGAGTTGAACCGTAAACGTTAT 1447 28 100.0 32 ............................ AGTTATGGATATTGAATCTGCTTTATCAATAC 1507 28 100.0 32 ............................ TCTGCGTCAACTCTCCCACTAGGGATTGCGTT 1567 28 100.0 32 ............................ GTTGCTTGTTGGCCGTGTTTAGCTCGTTGACT 1627 28 100.0 32 ............................ GCTACTTGCAAAGAGAATGGCGCAATTGAGCC 1687 28 100.0 32 ............................ GTTCCCGTCAATGATTGCTAGCTTTGGTGGAA 1747 28 100.0 32 ............................ TCGATCGCATGAGCAATAAGCATGTGATAAGC 1807 28 92.9 0 ........................A.G. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTTCCACACAGCAAGTTTGGTTTCACAAAAGGCTGCATCATCGCTGTGATCTTGCTTTCTTTGTCGCGGACTCTTAATCGTGGCCAACTTAGCCTAGATCGTTTTAAGTTTTGGCAGCCAACTTCACAGCTTTTGGCGTTGGACGTGGGTTTGTGAGATGCTTCTGCGTAAAATGGCTTTCAAATAAAGGTGTTTAAAAATCATTATTAAACAATAAGCTACGAAGCTAACAAACGCCTCAAGAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGTTGTTGTGGTTATGTTTAGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATATTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAAATCGAGTGAAAAATAAAAGGTTATTTTGAAAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGATAAAGTTTCATA # Right flank : TATTGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTTAAGAGGGATTCGCAACGCGTGGCATTTTCGTTATGCGTTGATTTTATTAGTTTTTAGTGTGATGCGGTGAGTTTTTCGTTGCGTTGCTCACCCCTTAACGCGGCGTTATGCTTAATCCATAAAAATCAGTAGGTTGTGTTATCGATTTCTTTGGCATTTCGTTCAGGTTTTGTCGGCAATTCAATATTGTTTGTCGCTGCCTAATGAAGCGGCAATGTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //