Array 1 2918231-2916249 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJU01000045.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL05133 2014LSAL05133_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2918230 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 2918169 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 2918108 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 2918047 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 2917986 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 2917925 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 2917864 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 2917803 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 2917742 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 2917681 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 2917620 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 2917559 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 2917498 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 2917437 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 2917376 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 2917315 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 2917254 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 2917193 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 2917132 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 2917071 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 2917010 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 2916949 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 2916888 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 2916827 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 2916766 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 2916705 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 2916644 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 2916583 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 2916522 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 2916461 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 2916400 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2916339 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2916278 29 96.6 0 A............................ | A [2916251] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2936167-2934489 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCJU01000045.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL05133 2014LSAL05133_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2936166 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 2936105 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 2936044 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 2935983 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2935922 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 2935861 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 2935800 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 2935739 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 2935678 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 2935617 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 2935556 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 2935495 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 2935434 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 2935372 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 2935311 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 2935250 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 2935189 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 2935128 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 2935066 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 2935005 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 2934944 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 2934882 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 2934821 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 2934760 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 2934699 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 2934638 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 2934577 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2934516 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //