Array 1 19904-20847 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLZ01000005.1 Salmonella enterica subsp. enterica serovar Banana strain NCTC 8718 NODE_5_length_248626_cov_69.6225_ID_4743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19904 29 100.0 32 ............................. ACTCGTCCGCCATGTCAGTGTTAGCCGTTGAA 19965 29 100.0 32 ............................. GGACGAAAACGACGTCCGCTGCGTAAAAACCC 20026 29 100.0 32 ............................. GCGGCAAAAGACGACAAAACGCGCCCTTTCGG 20087 29 100.0 32 ............................. GTTTTTGGTTTACCGCCGATCACCGGGAAAAA 20148 29 100.0 32 ............................. TTTTACGTACAGTGACAGCTCCAGTGATTTTC 20209 29 100.0 32 ............................. CGTCACCCAAACGAATTTTTCCTCGACCTGCA 20270 29 100.0 32 ............................. AGGTTATTAATCAGGACGGGCAATTTATTGTC 20331 29 100.0 32 ............................. CAGCGGAACTTATCGCCTCGTTCAGGCGCGAC 20392 29 100.0 32 ............................. GATACTGTGTGTGTATGCGATCCAATAACCAC 20453 29 100.0 32 ............................. ACGCGAAACCTGAACCATTCAGATTGGACAAA 20514 29 100.0 32 ............................. CTGGCGAACTGTCGGAAACCGACCGCATACCC 20575 29 100.0 32 ............................. GGGCGTTATCGAGTCGCAAGCGCCCCGGAACA 20636 29 100.0 32 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAA 20697 29 100.0 33 ............................. CCTCCTGTCTGTCCGGTCGCTCCAAGTGCTTTA 20759 29 96.6 32 ....................A........ CAAACGCGCTCGCTACCATTCCTAAAGATTCT 20820 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 36979-38961 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLZ01000005.1 Salmonella enterica subsp. enterica serovar Banana strain NCTC 8718 NODE_5_length_248626_cov_69.6225_ID_4743, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36979 29 100.0 32 ............................. GGAATTATGTCCTCTAAAGACTGGCTAATCAC 37040 29 100.0 32 ............................. ATGCGGCGCCGGTGGCCGTTGATGGTGTTTGT 37101 29 96.6 32 ............................A CGTTAAAAAGTCCTGTCGGCGGTACGGTCGAC 37162 29 100.0 32 ............................. ACCGCTTATTATAACGAATTCGATCCGTTCGC 37223 29 100.0 32 ............................. CTTCTGACCAGCCCATGCACCGGCGCTGACGA 37284 29 100.0 32 ............................. CGGAGTCGCCCACCAGTCGCGAATAAACGTCA 37345 29 100.0 32 ............................. CTCATCGGCTCGACGGGCCGAACGGGCGGCGC 37406 29 100.0 32 ............................. TGATTATTACAGAGCGTCATTGCGATAGCGCT 37467 29 100.0 32 ............................. GCTGAATTAATTAAAAAATTTGACGTCAACGG 37528 29 100.0 32 ............................. AGTTATTAAACGATAGCGGGATCGACATTGAG 37589 29 100.0 32 ............................. GCTTACAACATTACCGGTTCATCATCGCTGCG 37650 29 100.0 32 ............................. ACGACAGCTATCTCGACGTGAACACAATCGCC 37711 29 100.0 32 ............................. CGTCGGTGGTCTCCGAAATCCCCCGATAAATA 37772 29 100.0 32 ............................. AAAAATATTTACAGATTAAAAAAAACTTATCC 37833 29 100.0 32 ............................. GAGTGTAGACCAAATGACCAATAGCAAACTAA 37894 29 96.6 32 ......T...................... ATGATCGCCGAAACTGGCATAAGGGGAAAACC 37955 29 100.0 32 ............................. GTCAAACAATGAAACCGAACGATTTACCCAAA 38016 29 100.0 32 ............................. CAGCGGCATGACCAGCAGCACTGTTATCGCTA 38077 29 100.0 32 ............................. TCGGCCCTCAGGATATTGAAGGCCGGACACAT 38138 29 96.6 32 .........A................... GGAAATCAGCTCTCTACGCATTACAGGCTAAA 38199 29 100.0 32 ............................. CACATCAAAGAACAGCCAGTGCCGGTAGTGCC 38260 29 100.0 32 ............................. TCAGTTTTGATAACGGGGCTGATTCTTATAAC 38321 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTAGGTGAATGGGA 38382 29 100.0 32 ............................. CGTCGATAGATATCCGGGGTCTCAATCCCGAC 38443 29 100.0 32 ............................. AAAATGAGTAAATACACATTTACTTAAAAAAG 38504 29 100.0 32 ............................. GAGCGCTTTAACATCAGGTCTGGCTGATACTC 38565 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 38626 29 100.0 32 ............................. ACCGAAAAAGAGCTTGAGGCGCTGGCGGCAAA 38687 29 100.0 33 ............................. CCGGAAGGTATTCTGATTGACTACAACGATGGC 38749 29 100.0 32 ............................. GCCGCGCAGAACGAGAAGAAGTGATGGGCTGT 38810 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 38871 29 100.0 32 ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA 38932 29 93.1 0 A...........T................ | A [38958] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //